miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10884 5' -57 NC_002794.1 + 90352 0.67 0.916256
Target:  5'- uGUGCGUccUGUGcACCGugCGcguGCagGGCCGg -3'
miRNA:   3'- -CGCGCA--ACAC-UGGCugGC---UGg-CUGGC- -5'
10884 5' -57 NC_002794.1 + 120078 0.67 0.916256
Target:  5'- aCGCGgcgGUGGCggcgaCGACCGuGCCGAgCGc -3'
miRNA:   3'- cGCGCaa-CACUG-----GCUGGC-UGGCUgGC- -5'
10884 5' -57 NC_002794.1 + 153847 0.67 0.916256
Target:  5'- cGCGCGUUGccccCCG-CCGuGCCGGCgGa -3'
miRNA:   3'- -CGCGCAACacu-GGCuGGC-UGGCUGgC- -5'
10884 5' -57 NC_002794.1 + 133548 0.67 0.910623
Target:  5'- aCGCGUUGUGcACCGuCaCGGCgGAgCa -3'
miRNA:   3'- cGCGCAACAC-UGGCuG-GCUGgCUgGc -5'
10884 5' -57 NC_002794.1 + 122296 0.67 0.910623
Target:  5'- gGCGCGaggaGUGcccGCUGGCCGucGCCGugCGc -3'
miRNA:   3'- -CGCGCaa--CAC---UGGCUGGC--UGGCugGC- -5'
10884 5' -57 NC_002794.1 + 143545 0.67 0.909471
Target:  5'- gGCGCGgcacgagcacgGUGGCCcaGCCGugCGcGCCGu -3'
miRNA:   3'- -CGCGCaa---------CACUGGc-UGGCugGC-UGGC- -5'
10884 5' -57 NC_002794.1 + 179475 0.67 0.898712
Target:  5'- aGCGCGcacucGACCGGuugUCGGCCGuCCGg -3'
miRNA:   3'- -CGCGCaaca-CUGGCU---GGCUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 107 0.67 0.898712
Target:  5'- aCGCc----GGCCGACCGcacgaaacGCCGACCGg -3'
miRNA:   3'- cGCGcaacaCUGGCUGGC--------UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 102860 0.67 0.892438
Target:  5'- cGCgGCGUgGUGcGCCGGgaucgguuuCUGGCCGACCu -3'
miRNA:   3'- -CG-CGCAaCAC-UGGCU---------GGCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 101571 0.67 0.892438
Target:  5'- -gGCGggaGUG-CCGGCCGcCgCGGCCGg -3'
miRNA:   3'- cgCGCaa-CACuGGCUGGCuG-GCUGGC- -5'
10884 5' -57 NC_002794.1 + 126624 0.67 0.892438
Target:  5'- uCGCGgcGUGAgCgCGACCGGgCGcCCGg -3'
miRNA:   3'- cGCGCaaCACU-G-GCUGGCUgGCuGGC- -5'
10884 5' -57 NC_002794.1 + 50368 0.67 0.892438
Target:  5'- cCGCGga---GCCGGCCGGCagGACCGa -3'
miRNA:   3'- cGCGCaacacUGGCUGGCUGg-CUGGC- -5'
10884 5' -57 NC_002794.1 + 149959 0.68 0.885955
Target:  5'- uCGgGacGUGGCCGACCuGCCgcgGACCGg -3'
miRNA:   3'- cGCgCaaCACUGGCUGGcUGG---CUGGC- -5'
10884 5' -57 NC_002794.1 + 43043 0.68 0.879268
Target:  5'- cGCGCGgca-GGCCGAgCCGGCC-ACCc -3'
miRNA:   3'- -CGCGCaacaCUGGCU-GGCUGGcUGGc -5'
10884 5' -57 NC_002794.1 + 113727 0.68 0.879268
Target:  5'- -gGCGUcgGcGACUGcACCGACCgGACCa -3'
miRNA:   3'- cgCGCAa-CaCUGGC-UGGCUGG-CUGGc -5'
10884 5' -57 NC_002794.1 + 102472 0.68 0.872379
Target:  5'- gGCGCGUcggcGUG-CCGGCCGGCUu-CCa -3'
miRNA:   3'- -CGCGCAa---CACuGGCUGGCUGGcuGGc -5'
10884 5' -57 NC_002794.1 + 106976 0.68 0.870273
Target:  5'- cGCGCGgcggccggcacggcgGUGGCgGcGCUGGCCGACgCGa -3'
miRNA:   3'- -CGCGCaa-------------CACUGgC-UGGCUGGCUG-GC- -5'
10884 5' -57 NC_002794.1 + 32579 0.68 0.865293
Target:  5'- cGCGCGgcgGUG-CCGggGCCGggGCCGggGCCGg -3'
miRNA:   3'- -CGCGCaa-CACuGGC--UGGC--UGGC--UGGC- -5'
10884 5' -57 NC_002794.1 + 17488 0.68 0.865293
Target:  5'- cCGCGuUUGcGAUCG-CCGacGCCGGCCGa -3'
miRNA:   3'- cGCGC-AACaCUGGCuGGC--UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 49463 0.68 0.865293
Target:  5'- gGCGcCGccGUGACCGGCCG-CCG-CgGg -3'
miRNA:   3'- -CGC-GCaaCACUGGCUGGCuGGCuGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.