miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10884 5' -57 NC_002794.1 + 107 0.67 0.898712
Target:  5'- aCGCc----GGCCGACCGcacgaaacGCCGACCGg -3'
miRNA:   3'- cGCGcaacaCUGGCUGGC--------UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 14562 0.73 0.594488
Target:  5'- cGCGCGggagGcGAgCCGGCCGACCGAagCGg -3'
miRNA:   3'- -CGCGCaa--CaCU-GGCUGGCUGGCUg-GC- -5'
10884 5' -57 NC_002794.1 + 15114 0.66 0.936606
Target:  5'- cGCGCcg-GaGACCGACCG-CCGugUu -3'
miRNA:   3'- -CGCGcaaCaCUGGCUGGCuGGCugGc -5'
10884 5' -57 NC_002794.1 + 17488 0.68 0.865293
Target:  5'- cCGCGuUUGcGAUCG-CCGacGCCGGCCGa -3'
miRNA:   3'- cGCGC-AACaCUGGCuGGC--UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 18245 0.74 0.546249
Target:  5'- aGCGCGcgc-GGCCGACCGG-CGACCGc -3'
miRNA:   3'- -CGCGCaacaCUGGCUGGCUgGCUGGC- -5'
10884 5' -57 NC_002794.1 + 19244 0.66 0.936606
Target:  5'- aGC-CGaugaUGUG-CCGACCGGCCGcgGCCc -3'
miRNA:   3'- -CGcGCa---ACACuGGCUGGCUGGC--UGGc -5'
10884 5' -57 NC_002794.1 + 22780 1.11 0.002882
Target:  5'- cGCGCGUUGUGACCGACCGACCGACCGa -3'
miRNA:   3'- -CGCGCAACACUGGCUGGCUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 27382 0.68 0.850551
Target:  5'- aCGCacggGUcGACCGACCGgaugaccgcucgACCGGCCGc -3'
miRNA:   3'- cGCGcaa-CA-CUGGCUGGC------------UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 30093 0.66 0.926868
Target:  5'- gGCGCGc---GGCCGGucCCGACCcACCGc -3'
miRNA:   3'- -CGCGCaacaCUGGCU--GGCUGGcUGGC- -5'
10884 5' -57 NC_002794.1 + 32262 0.69 0.835085
Target:  5'- gGCGCucgacGGCCGGCCGAUCGGCg- -3'
miRNA:   3'- -CGCGcaacaCUGGCUGGCUGGCUGgc -5'
10884 5' -57 NC_002794.1 + 32304 0.69 0.842906
Target:  5'- cCGCGgc--GGCCGcGCCGGCCGcgGCCGg -3'
miRNA:   3'- cGCGCaacaCUGGC-UGGCUGGC--UGGC- -5'
10884 5' -57 NC_002794.1 + 32579 0.68 0.865293
Target:  5'- cGCGCGgcgGUG-CCGggGCCGggGCCGggGCCGg -3'
miRNA:   3'- -CGCGCaa-CACuGGC--UGGC--UGGC--UGGC- -5'
10884 5' -57 NC_002794.1 + 34757 0.7 0.757956
Target:  5'- gGCGCGgUGgGACgCGGCaCGGCCGcCCGc -3'
miRNA:   3'- -CGCGCaACaCUG-GCUG-GCUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 42053 0.74 0.546249
Target:  5'- aGCGCGUgccagaUGAUguUGGCCGACUGGCCGc -3'
miRNA:   3'- -CGCGCAac----ACUG--GCUGGCUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 43043 0.68 0.879268
Target:  5'- cGCGCGgca-GGCCGAgCCGGCC-ACCc -3'
miRNA:   3'- -CGCGCaacaCUGGCU-GGCUGGcUGGc -5'
10884 5' -57 NC_002794.1 + 44244 0.66 0.941149
Target:  5'- cGgGCGgcucgGUG-CCGGgCGGCuCGGCCGc -3'
miRNA:   3'- -CgCGCaa---CACuGGCUgGCUG-GCUGGC- -5'
10884 5' -57 NC_002794.1 + 44398 0.68 0.850551
Target:  5'- cGCGCccGUUccggucUGACCGGCCGgcGCCGAgCGg -3'
miRNA:   3'- -CGCG--CAAc-----ACUGGCUGGC--UGGCUgGC- -5'
10884 5' -57 NC_002794.1 + 47951 0.71 0.701617
Target:  5'- cGCGCGUcccgGcGCCGGCUGGgCGACCGc -3'
miRNA:   3'- -CGCGCAaca-C-UGGCUGGCUgGCUGGC- -5'
10884 5' -57 NC_002794.1 + 48722 0.72 0.662881
Target:  5'- uGCGCGgau---CCGACCGGCCGcaauACCGg -3'
miRNA:   3'- -CGCGCaacacuGGCUGGCUGGC----UGGC- -5'
10884 5' -57 NC_002794.1 + 49463 0.68 0.865293
Target:  5'- gGCGcCGccGUGACCGGCCG-CCG-CgGg -3'
miRNA:   3'- -CGC-GCaaCACUGGCUGGCuGGCuGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.