miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10884 5' -57 NC_002794.1 + 104879 0.72 0.691994
Target:  5'- gGCGCGUgaagcgGGCCGGCCGcgaggcGCCGugCu -3'
miRNA:   3'- -CGCGCAaca---CUGGCUGGC------UGGCugGc -5'
10884 5' -57 NC_002794.1 + 106976 0.68 0.870273
Target:  5'- cGCGCGgcggccggcacggcgGUGGCgGcGCUGGCCGACgCGa -3'
miRNA:   3'- -CGCGCaa-------------CACUGgC-UGGCUGGCUG-GC- -5'
10884 5' -57 NC_002794.1 + 113727 0.68 0.879268
Target:  5'- -gGCGUcgGcGACUGcACCGACCgGACCa -3'
miRNA:   3'- cgCGCAa-CaCUGGC-UGGCUGG-CUGGc -5'
10884 5' -57 NC_002794.1 + 115928 0.72 0.653121
Target:  5'- gGCGCGgcGgcgGGCCGGCCcGCCGcgugucGCCGg -3'
miRNA:   3'- -CGCGCaaCa--CUGGCUGGcUGGC------UGGC- -5'
10884 5' -57 NC_002794.1 + 118499 0.67 0.916256
Target:  5'- gGUGCucgUGcgGGCCGACCagGACCGcCCGc -3'
miRNA:   3'- -CGCGca-ACa-CUGGCUGG--CUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 120078 0.67 0.916256
Target:  5'- aCGCGgcgGUGGCggcgaCGACCGuGCCGAgCGc -3'
miRNA:   3'- cGCGCaa-CACUG-----GCUGGC-UGGCUgGC- -5'
10884 5' -57 NC_002794.1 + 120125 0.66 0.936606
Target:  5'- cGCGCGacgGcGACCgggGACgGGCCGguGCCGg -3'
miRNA:   3'- -CGCGCaa-CaCUGG---CUGgCUGGC--UGGC- -5'
10884 5' -57 NC_002794.1 + 122132 0.7 0.767037
Target:  5'- cGCGCGc----ACCGACCGuuucacGCCGGCCGu -3'
miRNA:   3'- -CGCGCaacacUGGCUGGC------UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 122296 0.67 0.910623
Target:  5'- gGCGCGaggaGUGcccGCUGGCCGucGCCGugCGc -3'
miRNA:   3'- -CGCGCaa--CAC---UGGCUGGC--UGGCugGC- -5'
10884 5' -57 NC_002794.1 + 122995 0.77 0.38711
Target:  5'- gGUGCGggccgUGcUGACgGGCCGGCUGGCCGu -3'
miRNA:   3'- -CGCGCa----AC-ACUGgCUGGCUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 123428 0.71 0.739497
Target:  5'- aGCGaCGaggcgGUGACCGucGCCGAgCGGCUGg -3'
miRNA:   3'- -CGC-GCaa---CACUGGC--UGGCUgGCUGGC- -5'
10884 5' -57 NC_002794.1 + 124256 0.68 0.858015
Target:  5'- cGCGCGgguaGUcGCCGGCCaGCCG-CCGc -3'
miRNA:   3'- -CGCGCaa--CAcUGGCUGGcUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 126067 0.8 0.273767
Target:  5'- cGCGCGccUGgccugGACCGGCCugcGGCCGACCGa -3'
miRNA:   3'- -CGCGCa-ACa----CUGGCUGG---CUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 126624 0.67 0.892438
Target:  5'- uCGCGgcGUGAgCgCGACCGGgCGcCCGg -3'
miRNA:   3'- cGCGCaaCACU-G-GCUGGCUgGCuGGC- -5'
10884 5' -57 NC_002794.1 + 128201 0.74 0.584766
Target:  5'- cGCGaCGaUGgGACuCGACCGAUCGACCc -3'
miRNA:   3'- -CGC-GCaACaCUG-GCUGGCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 129060 0.66 0.931846
Target:  5'- cGCGCGacggUGUGuCgCGGCuggCGGCgGACCGu -3'
miRNA:   3'- -CGCGCa---ACACuG-GCUG---GCUGgCUGGC- -5'
10884 5' -57 NC_002794.1 + 129167 0.66 0.936606
Target:  5'- uCGCGgccgaUGGCCGuuCGAUCGGCCu -3'
miRNA:   3'- cGCGCaac--ACUGGCugGCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 131030 0.68 0.850551
Target:  5'- cGUGCGgcGcGGCCGGCUG-CCG-CCGa -3'
miRNA:   3'- -CGCGCaaCaCUGGCUGGCuGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 133548 0.67 0.910623
Target:  5'- aCGCGUUGUGcACCGuCaCGGCgGAgCa -3'
miRNA:   3'- cGCGCAACAC-UGGCuG-GCUGgCUgGc -5'
10884 5' -57 NC_002794.1 + 135530 0.74 0.535791
Target:  5'- cGCGCGccgcucgGUcGCCGACCGACCGaauaggggcgcagGCCGg -3'
miRNA:   3'- -CGCGCaa-----CAcUGGCUGGCUGGC-------------UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.