miRNA display CGI


Results 61 - 80 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10884 5' -57 NC_002794.1 + 140680 0.72 0.682325
Target:  5'- gGCGCaGgucgGugCGACgGACCGGCCGc -3'
miRNA:   3'- -CGCG-CaacaCugGCUGgCUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 141645 0.66 0.941149
Target:  5'- gGC-CGgcGUGGCCGcgGCCG-CCGGCgGg -3'
miRNA:   3'- -CGcGCaaCACUGGC--UGGCuGGCUGgC- -5'
10884 5' -57 NC_002794.1 + 141696 0.66 0.936606
Target:  5'- cGCGguccCGUcGUGGCCGaACCGgcguucGCCGAuCCGa -3'
miRNA:   3'- -CGC----GCAaCACUGGC-UGGC------UGGCU-GGC- -5'
10884 5' -57 NC_002794.1 + 143545 0.67 0.909471
Target:  5'- gGCGCGgcacgagcacgGUGGCCcaGCCGugCGcGCCGu -3'
miRNA:   3'- -CGCGCaa---------CACUGGc-UGGCugGC-UGGC- -5'
10884 5' -57 NC_002794.1 + 145901 0.66 0.945475
Target:  5'- aGCGCGacGgggGAgUCGACCGcGCCGAgCGg -3'
miRNA:   3'- -CGCGCaaCa--CU-GGCUGGC-UGGCUgGC- -5'
10884 5' -57 NC_002794.1 + 149308 0.7 0.757956
Target:  5'- gGCGgGUguagGUagggcaagucgGACCgGACCGaACCGGCCGg -3'
miRNA:   3'- -CGCgCAa---CA-----------CUGG-CUGGC-UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 149959 0.68 0.885955
Target:  5'- uCGgGacGUGGCCGACCuGCCgcgGACCGg -3'
miRNA:   3'- cGCgCaaCACUGGCUGGcUGG---CUGGC- -5'
10884 5' -57 NC_002794.1 + 153347 0.66 0.941149
Target:  5'- cGCGUGUUGUcagGACgCGGCCcGGCUGcgcGCCc -3'
miRNA:   3'- -CGCGCAACA---CUG-GCUGG-CUGGC---UGGc -5'
10884 5' -57 NC_002794.1 + 153423 0.69 0.819767
Target:  5'- cGCGCGgagccgagcugggcGUGGaCGAUCGaACCGACCGa -3'
miRNA:   3'- -CGCGCaa------------CACUgGCUGGC-UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 153717 0.69 0.827096
Target:  5'- cCGCGacGUcACCGacGCCGAgCCGACCGg -3'
miRNA:   3'- cGCGCaaCAcUGGC--UGGCU-GGCUGGC- -5'
10884 5' -57 NC_002794.1 + 153847 0.67 0.916256
Target:  5'- cGCGCGUUGccccCCG-CCGuGCCGGCgGa -3'
miRNA:   3'- -CGCGCAACacu-GGCuGGC-UGGCUGgC- -5'
10884 5' -57 NC_002794.1 + 157333 0.66 0.931846
Target:  5'- cGCGCGUccgGUcGACCGGaCGACgCGuuauCCGg -3'
miRNA:   3'- -CGCGCAa--CA-CUGGCUgGCUG-GCu---GGC- -5'
10884 5' -57 NC_002794.1 + 159270 0.8 0.299383
Target:  5'- uCGaCGUUGUGACUGACuCGACCGACg- -3'
miRNA:   3'- cGC-GCAACACUGGCUG-GCUGGCUGgc -5'
10884 5' -57 NC_002794.1 + 163821 0.66 0.940704
Target:  5'- -aGUGUUGUGGagauggacgauguCCGACCGcGCUGGCUu -3'
miRNA:   3'- cgCGCAACACU-------------GGCUGGC-UGGCUGGc -5'
10884 5' -57 NC_002794.1 + 176587 0.66 0.945475
Target:  5'- aCGgGaUGUGACucacggagagCGGCCGGCaCGGCCa -3'
miRNA:   3'- cGCgCaACACUG----------GCUGGCUG-GCUGGc -5'
10884 5' -57 NC_002794.1 + 179475 0.67 0.898712
Target:  5'- aGCGCGcacucGACCGGuugUCGGCCGuCCGg -3'
miRNA:   3'- -CGCGCaaca-CUGGCU---GGCUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 180292 0.66 0.935201
Target:  5'- cGCGCcgccgcaacacGCCGGCCGGCgCGACCa -3'
miRNA:   3'- -CGCGcaacac-----UGGCUGGCUG-GCUGGc -5'
10884 5' -57 NC_002794.1 + 189868 0.72 0.672618
Target:  5'- -gGCGUcGUcGCCG-CCGACCGGCCc -3'
miRNA:   3'- cgCGCAaCAcUGGCuGGCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 191002 0.66 0.931846
Target:  5'- -gGCGUcGcGAUCGGCCGuuCGAUCGg -3'
miRNA:   3'- cgCGCAaCaCUGGCUGGCugGCUGGC- -5'
10884 5' -57 NC_002794.1 + 192380 0.7 0.776008
Target:  5'- aGCGCGggcUGACCGccACCG-CCGcGCCGg -3'
miRNA:   3'- -CGCGCaacACUGGC--UGGCuGGC-UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.