miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10884 5' -57 NC_002794.1 + 104879 0.72 0.691994
Target:  5'- gGCGCGUgaagcgGGCCGGCCGcgaggcGCCGugCu -3'
miRNA:   3'- -CGCGCAaca---CUGGCUGGC------UGGCugGc -5'
10884 5' -57 NC_002794.1 + 103937 0.68 0.864574
Target:  5'- aGCGCGc-GUGGCCGccGCCGcucgccaGCCG-CCGg -3'
miRNA:   3'- -CGCGCaaCACUGGC--UGGC-------UGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 102860 0.67 0.892438
Target:  5'- cGCgGCGUgGUGcGCCGGgaucgguuuCUGGCCGACCu -3'
miRNA:   3'- -CG-CGCAaCAC-UGGCU---------GGCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 102472 0.68 0.872379
Target:  5'- gGCGCGUcggcGUG-CCGGCCGGCUu-CCa -3'
miRNA:   3'- -CGCGCAa---CACuGGCUGGCUGGcuGGc -5'
10884 5' -57 NC_002794.1 + 101571 0.67 0.892438
Target:  5'- -gGCGggaGUG-CCGGCCGcCgCGGCCGg -3'
miRNA:   3'- cgCGCaa-CACuGGCUGGCuG-GCUGGC- -5'
10884 5' -57 NC_002794.1 + 100324 0.66 0.934728
Target:  5'- cGCGCGgccggcgcacGGCCGGCucuCGACCG-CCGa -3'
miRNA:   3'- -CGCGCaaca------CUGGCUG---GCUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 99927 0.66 0.931846
Target:  5'- cGUGCGgcGUGGucuugcggcuguUCGGCCGgACCG-CCGa -3'
miRNA:   3'- -CGCGCaaCACU------------GGCUGGC-UGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 90664 0.69 0.810639
Target:  5'- cGCGcCGUUGgGGCCGGCCGcgUGGCUGu -3'
miRNA:   3'- -CGC-GCAACaCUGGCUGGCugGCUGGC- -5'
10884 5' -57 NC_002794.1 + 90475 0.69 0.8098
Target:  5'- cGCGCGgcGgGGCCGccgucccGCgCGAUCGGCCGu -3'
miRNA:   3'- -CGCGCaaCaCUGGC-------UG-GCUGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 90352 0.67 0.916256
Target:  5'- uGUGCGUccUGUGcACCGugCGcguGCagGGCCGg -3'
miRNA:   3'- -CGCGCA--ACAC-UGGCugGC---UGg-CUGGC- -5'
10884 5' -57 NC_002794.1 + 76951 0.7 0.79359
Target:  5'- cCGCGgaGacGCCGuCCGGCCGGCCc -3'
miRNA:   3'- cGCGCaaCacUGGCuGGCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 75580 0.7 0.776008
Target:  5'- cCGCGcaGUGGCUG-CCGGCCG-CCGc -3'
miRNA:   3'- cGCGCaaCACUGGCuGGCUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 72746 0.69 0.810639
Target:  5'- cCGCGgc--GGCCG-CCGACCGAgCGg -3'
miRNA:   3'- cGCGCaacaCUGGCuGGCUGGCUgGC- -5'
10884 5' -57 NC_002794.1 + 71230 0.7 0.802185
Target:  5'- cCGCGUaGUGG-CGGCCGGCgugGACCGg -3'
miRNA:   3'- cGCGCAaCACUgGCUGGCUGg--CUGGC- -5'
10884 5' -57 NC_002794.1 + 68473 0.69 0.842906
Target:  5'- gGCGCaGUggggcacggagGcGGCCGAgCCGGCCGugCGg -3'
miRNA:   3'- -CGCG-CAa----------CaCUGGCU-GGCUGGCugGC- -5'
10884 5' -57 NC_002794.1 + 66857 0.66 0.941149
Target:  5'- gGCGCGgcGaGGCCGcGgCGugCGGCUGa -3'
miRNA:   3'- -CGCGCaaCaCUGGC-UgGCugGCUGGC- -5'
10884 5' -57 NC_002794.1 + 63915 0.69 0.818945
Target:  5'- uCGCGccGcGACCG-CCGcCCGGCCGg -3'
miRNA:   3'- cGCGCaaCaCUGGCuGGCuGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 61752 0.69 0.845985
Target:  5'- cGCGCGagGUGugCGaggggggguccucucGCCucCCGACCGu -3'
miRNA:   3'- -CGCGCaaCACugGC---------------UGGcuGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 57601 0.7 0.781335
Target:  5'- cGCGCGUggccaccgagaagGcGGCCGACgaccUGGCCGACCc -3'
miRNA:   3'- -CGCGCAa------------CaCUGGCUG----GCUGGCUGGc -5'
10884 5' -57 NC_002794.1 + 51213 0.77 0.403287
Target:  5'- cCGCGgaGcGGCCGGCCGGCCGAUgGg -3'
miRNA:   3'- cGCGCaaCaCUGGCUGGCUGGCUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.