Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10884 | 5' | -57 | NC_002794.1 | + | 141696 | 0.66 | 0.936606 |
Target: 5'- cGCGguccCGUcGUGGCCGaACCGgcguucGCCGAuCCGa -3' miRNA: 3'- -CGC----GCAaCACUGGC-UGGC------UGGCU-GGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 66857 | 0.66 | 0.941149 |
Target: 5'- gGCGCGgcGaGGCCGcGgCGugCGGCUGa -3' miRNA: 3'- -CGCGCaaCaCUGGC-UgGCugGCUGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 141645 | 0.66 | 0.941149 |
Target: 5'- gGC-CGgcGUGGCCGcgGCCG-CCGGCgGg -3' miRNA: 3'- -CGcGCaaCACUGGC--UGGCuGGCUGgC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 153347 | 0.66 | 0.941149 |
Target: 5'- cGCGUGUUGUcagGACgCGGCCcGGCUGcgcGCCc -3' miRNA: 3'- -CGCGCAACA---CUG-GCUGG-CUGGC---UGGc -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 176587 | 0.66 | 0.945475 |
Target: 5'- aCGgGaUGUGACucacggagagCGGCCGGCaCGGCCa -3' miRNA: 3'- cGCgCaACACUG----------GCUGGCUG-GCUGGc -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 99927 | 0.66 | 0.931846 |
Target: 5'- cGUGCGgcGUGGucuugcggcuguUCGGCCGgACCG-CCGa -3' miRNA: 3'- -CGCGCaaCACU------------GGCUGGC-UGGCuGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 100324 | 0.66 | 0.934728 |
Target: 5'- cGCGCGgccggcgcacGGCCGGCucuCGACCG-CCGa -3' miRNA: 3'- -CGCGCaaca------CUGGCUG---GCUGGCuGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 107 | 0.67 | 0.898712 |
Target: 5'- aCGCc----GGCCGACCGcacgaaacGCCGACCGg -3' miRNA: 3'- cGCGcaacaCUGGCUGGC--------UGGCUGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 179475 | 0.67 | 0.898712 |
Target: 5'- aGCGCGcacucGACCGGuugUCGGCCGuCCGg -3' miRNA: 3'- -CGCGCaaca-CUGGCU---GGCUGGCuGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 126624 | 0.67 | 0.892438 |
Target: 5'- uCGCGgcGUGAgCgCGACCGGgCGcCCGg -3' miRNA: 3'- cGCGCaaCACU-G-GCUGGCUgGCuGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 143545 | 0.67 | 0.909471 |
Target: 5'- gGCGCGgcacgagcacgGUGGCCcaGCCGugCGcGCCGu -3' miRNA: 3'- -CGCGCaa---------CACUGGc-UGGCugGC-UGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 122296 | 0.67 | 0.910623 |
Target: 5'- gGCGCGaggaGUGcccGCUGGCCGucGCCGugCGc -3' miRNA: 3'- -CGCGCaa--CAC---UGGCUGGC--UGGCugGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 133548 | 0.67 | 0.910623 |
Target: 5'- aCGCGUUGUGcACCGuCaCGGCgGAgCa -3' miRNA: 3'- cGCGCAACAC-UGGCuG-GCUGgCUgGc -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 118499 | 0.67 | 0.916256 |
Target: 5'- gGUGCucgUGcgGGCCGACCagGACCGcCCGc -3' miRNA: 3'- -CGCGca-ACa-CUGGCUGG--CUGGCuGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 90352 | 0.67 | 0.916256 |
Target: 5'- uGUGCGUccUGUGcACCGugCGcguGCagGGCCGg -3' miRNA: 3'- -CGCGCA--ACAC-UGGCugGC---UGg-CUGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 120078 | 0.67 | 0.916256 |
Target: 5'- aCGCGgcgGUGGCggcgaCGACCGuGCCGAgCGc -3' miRNA: 3'- cGCGCaa-CACUG-----GCUGGC-UGGCUgGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 153847 | 0.67 | 0.916256 |
Target: 5'- cGCGCGUUGccccCCG-CCGuGCCGGCgGa -3' miRNA: 3'- -CGCGCAACacu-GGCuGGC-UGGCUGgC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 30093 | 0.66 | 0.926868 |
Target: 5'- gGCGCGc---GGCCGGucCCGACCcACCGc -3' miRNA: 3'- -CGCGCaacaCUGGCU--GGCUGGcUGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 191002 | 0.66 | 0.931846 |
Target: 5'- -gGCGUcGcGAUCGGCCGuuCGAUCGg -3' miRNA: 3'- cgCGCAaCaCUGGCUGGCugGCUGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 129060 | 0.66 | 0.931846 |
Target: 5'- cGCGCGacggUGUGuCgCGGCuggCGGCgGACCGu -3' miRNA: 3'- -CGCGCa---ACACuG-GCUG---GCUGgCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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