miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10884 5' -57 NC_002794.1 + 141696 0.66 0.936606
Target:  5'- cGCGguccCGUcGUGGCCGaACCGgcguucGCCGAuCCGa -3'
miRNA:   3'- -CGC----GCAaCACUGGC-UGGC------UGGCU-GGC- -5'
10884 5' -57 NC_002794.1 + 66857 0.66 0.941149
Target:  5'- gGCGCGgcGaGGCCGcGgCGugCGGCUGa -3'
miRNA:   3'- -CGCGCaaCaCUGGC-UgGCugGCUGGC- -5'
10884 5' -57 NC_002794.1 + 141645 0.66 0.941149
Target:  5'- gGC-CGgcGUGGCCGcgGCCG-CCGGCgGg -3'
miRNA:   3'- -CGcGCaaCACUGGC--UGGCuGGCUGgC- -5'
10884 5' -57 NC_002794.1 + 153347 0.66 0.941149
Target:  5'- cGCGUGUUGUcagGACgCGGCCcGGCUGcgcGCCc -3'
miRNA:   3'- -CGCGCAACA---CUG-GCUGG-CUGGC---UGGc -5'
10884 5' -57 NC_002794.1 + 176587 0.66 0.945475
Target:  5'- aCGgGaUGUGACucacggagagCGGCCGGCaCGGCCa -3'
miRNA:   3'- cGCgCaACACUG----------GCUGGCUG-GCUGGc -5'
10884 5' -57 NC_002794.1 + 99927 0.66 0.931846
Target:  5'- cGUGCGgcGUGGucuugcggcuguUCGGCCGgACCG-CCGa -3'
miRNA:   3'- -CGCGCaaCACU------------GGCUGGC-UGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 100324 0.66 0.934728
Target:  5'- cGCGCGgccggcgcacGGCCGGCucuCGACCG-CCGa -3'
miRNA:   3'- -CGCGCaaca------CUGGCUG---GCUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 107 0.67 0.898712
Target:  5'- aCGCc----GGCCGACCGcacgaaacGCCGACCGg -3'
miRNA:   3'- cGCGcaacaCUGGCUGGC--------UGGCUGGC- -5'
10884 5' -57 NC_002794.1 + 179475 0.67 0.898712
Target:  5'- aGCGCGcacucGACCGGuugUCGGCCGuCCGg -3'
miRNA:   3'- -CGCGCaaca-CUGGCU---GGCUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 126624 0.67 0.892438
Target:  5'- uCGCGgcGUGAgCgCGACCGGgCGcCCGg -3'
miRNA:   3'- cGCGCaaCACU-G-GCUGGCUgGCuGGC- -5'
10884 5' -57 NC_002794.1 + 143545 0.67 0.909471
Target:  5'- gGCGCGgcacgagcacgGUGGCCcaGCCGugCGcGCCGu -3'
miRNA:   3'- -CGCGCaa---------CACUGGc-UGGCugGC-UGGC- -5'
10884 5' -57 NC_002794.1 + 122296 0.67 0.910623
Target:  5'- gGCGCGaggaGUGcccGCUGGCCGucGCCGugCGc -3'
miRNA:   3'- -CGCGCaa--CAC---UGGCUGGC--UGGCugGC- -5'
10884 5' -57 NC_002794.1 + 133548 0.67 0.910623
Target:  5'- aCGCGUUGUGcACCGuCaCGGCgGAgCa -3'
miRNA:   3'- cGCGCAACAC-UGGCuG-GCUGgCUgGc -5'
10884 5' -57 NC_002794.1 + 118499 0.67 0.916256
Target:  5'- gGUGCucgUGcgGGCCGACCagGACCGcCCGc -3'
miRNA:   3'- -CGCGca-ACa-CUGGCUGG--CUGGCuGGC- -5'
10884 5' -57 NC_002794.1 + 90352 0.67 0.916256
Target:  5'- uGUGCGUccUGUGcACCGugCGcguGCagGGCCGg -3'
miRNA:   3'- -CGCGCA--ACAC-UGGCugGC---UGg-CUGGC- -5'
10884 5' -57 NC_002794.1 + 120078 0.67 0.916256
Target:  5'- aCGCGgcgGUGGCggcgaCGACCGuGCCGAgCGc -3'
miRNA:   3'- cGCGCaa-CACUG-----GCUGGC-UGGCUgGC- -5'
10884 5' -57 NC_002794.1 + 153847 0.67 0.916256
Target:  5'- cGCGCGUUGccccCCG-CCGuGCCGGCgGa -3'
miRNA:   3'- -CGCGCAACacu-GGCuGGC-UGGCUGgC- -5'
10884 5' -57 NC_002794.1 + 30093 0.66 0.926868
Target:  5'- gGCGCGc---GGCCGGucCCGACCcACCGc -3'
miRNA:   3'- -CGCGCaacaCUGGCU--GGCUGGcUGGC- -5'
10884 5' -57 NC_002794.1 + 191002 0.66 0.931846
Target:  5'- -gGCGUcGcGAUCGGCCGuuCGAUCGg -3'
miRNA:   3'- cgCGCAaCaCUGGCUGGCugGCUGGC- -5'
10884 5' -57 NC_002794.1 + 129060 0.66 0.931846
Target:  5'- cGCGCGacggUGUGuCgCGGCuggCGGCgGACCGu -3'
miRNA:   3'- -CGCGCa---ACACuG-GCUG---GCUGgCUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.