Results 61 - 80 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10884 | 5' | -57 | NC_002794.1 | + | 153847 | 0.67 | 0.916256 |
Target: 5'- cGCGCGUUGccccCCG-CCGuGCCGGCgGa -3' miRNA: 3'- -CGCGCAACacu-GGCuGGC-UGGCUGgC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 120078 | 0.67 | 0.916256 |
Target: 5'- aCGCGgcgGUGGCggcgaCGACCGuGCCGAgCGc -3' miRNA: 3'- cGCGCaa-CACUG-----GCUGGC-UGGCUgGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 149959 | 0.68 | 0.885955 |
Target: 5'- uCGgGacGUGGCCGACCuGCCgcgGACCGg -3' miRNA: 3'- cGCgCaaCACUGGCUGGcUGG---CUGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 50368 | 0.67 | 0.892438 |
Target: 5'- cCGCGga---GCCGGCCGGCagGACCGa -3' miRNA: 3'- cGCGCaacacUGGCUGGCUGg-CUGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 43043 | 0.68 | 0.879268 |
Target: 5'- cGCGCGgca-GGCCGAgCCGGCC-ACCc -3' miRNA: 3'- -CGCGCaacaCUGGCU-GGCUGGcUGGc -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 102472 | 0.68 | 0.872379 |
Target: 5'- gGCGCGUcggcGUG-CCGGCCGGCUu-CCa -3' miRNA: 3'- -CGCGCAa---CACuGGCUGGCUGGcuGGc -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 113727 | 0.68 | 0.879268 |
Target: 5'- -gGCGUcgGcGACUGcACCGACCgGACCa -3' miRNA: 3'- cgCGCAa-CaCUGGC-UGGCUGG-CUGGc -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 32579 | 0.68 | 0.865293 |
Target: 5'- cGCGCGgcgGUG-CCGggGCCGggGCCGggGCCGg -3' miRNA: 3'- -CGCGCaa-CACuGGC--UGGC--UGGC--UGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 106976 | 0.68 | 0.870273 |
Target: 5'- cGCGCGgcggccggcacggcgGUGGCgGcGCUGGCCGACgCGa -3' miRNA: 3'- -CGCGCaa-------------CACUGgC-UGGCUGGCUG-GC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 17488 | 0.68 | 0.865293 |
Target: 5'- cCGCGuUUGcGAUCG-CCGacGCCGGCCGa -3' miRNA: 3'- cGCGC-AACaCUGGCuGGC--UGGCUGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 102860 | 0.67 | 0.892438 |
Target: 5'- cGCgGCGUgGUGcGCCGGgaucgguuuCUGGCCGACCu -3' miRNA: 3'- -CG-CGCAaCAC-UGGCU---------GGCUGGCUGGc -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 101571 | 0.67 | 0.892438 |
Target: 5'- -gGCGggaGUG-CCGGCCGcCgCGGCCGg -3' miRNA: 3'- cgCGCaa-CACuGGCUGGCuG-GCUGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 90352 | 0.67 | 0.916256 |
Target: 5'- uGUGCGUccUGUGcACCGugCGcguGCagGGCCGg -3' miRNA: 3'- -CGCGCA--ACAC-UGGCugGC---UGg-CUGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 118499 | 0.67 | 0.916256 |
Target: 5'- gGUGCucgUGcgGGCCGACCagGACCGcCCGc -3' miRNA: 3'- -CGCGca-ACa-CUGGCUGG--CUGGCuGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 133548 | 0.67 | 0.910623 |
Target: 5'- aCGCGUUGUGcACCGuCaCGGCgGAgCa -3' miRNA: 3'- cGCGCAACAC-UGGCuG-GCUGgCUgGc -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 122296 | 0.67 | 0.910623 |
Target: 5'- gGCGCGaggaGUGcccGCUGGCCGucGCCGugCGc -3' miRNA: 3'- -CGCGCaa--CAC---UGGCUGGC--UGGCugGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 143545 | 0.67 | 0.909471 |
Target: 5'- gGCGCGgcacgagcacgGUGGCCcaGCCGugCGcGCCGu -3' miRNA: 3'- -CGCGCaa---------CACUGGc-UGGCugGC-UGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 126624 | 0.67 | 0.892438 |
Target: 5'- uCGCGgcGUGAgCgCGACCGGgCGcCCGg -3' miRNA: 3'- cGCGCaaCACU-G-GCUGGCUgGCuGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 179475 | 0.67 | 0.898712 |
Target: 5'- aGCGCGcacucGACCGGuugUCGGCCGuCCGg -3' miRNA: 3'- -CGCGCaaca-CUGGCU---GGCUGGCuGGC- -5' |
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10884 | 5' | -57 | NC_002794.1 | + | 107 | 0.67 | 0.898712 |
Target: 5'- aCGCc----GGCCGACCGcacgaaacGCCGACCGg -3' miRNA: 3'- cGCGcaacaCUGGCUGGC--------UGGCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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