miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 3' -53.9 NC_002794.1 + 183074 0.66 0.98412
Target:  5'- gCUGGACGGGaaCGAGaGCGA--GGUcGUCAc -3'
miRNA:   3'- -GGCUUGCCC--GUUC-CGCUauCCA-CAGU- -5'
10885 3' -53.9 NC_002794.1 + 125669 0.66 0.98412
Target:  5'- gCUGAACGGGCucuggcugacGGGCGAc--GUGUUg -3'
miRNA:   3'- -GGCUUGCCCGu---------UCCGCUaucCACAGu -5'
10885 3' -53.9 NC_002794.1 + 129428 0.66 0.98412
Target:  5'- -aGGACGGGCGGaGCGAgucugaaccGGaGUGUCGu -3'
miRNA:   3'- ggCUUGCCCGUUcCGCUa--------UC-CACAGU- -5'
10885 3' -53.9 NC_002794.1 + 120651 0.66 0.98412
Target:  5'- aCGAgagGCgGGGCGAGGUGAUGuacGUGUa- -3'
miRNA:   3'- gGCU---UG-CCCGUUCCGCUAUc--CACAgu -5'
10885 3' -53.9 NC_002794.1 + 70484 0.66 0.980171
Target:  5'- cCCGAuguCgGGGCAGGGCGAccgacAGGagccgGUCc -3'
miRNA:   3'- -GGCUu--G-CCCGUUCCGCUa----UCCa----CAGu -5'
10885 3' -53.9 NC_002794.1 + 178042 0.66 0.978855
Target:  5'- uCCGGcugACGGGUggagacuggaagagcGAGG-GAUccGGGUGUCGa -3'
miRNA:   3'- -GGCU---UGCCCG---------------UUCCgCUA--UCCACAGU- -5'
10885 3' -53.9 NC_002794.1 + 78326 0.66 0.977942
Target:  5'- cCCGGcgcgACGGGCgGAGGCGcc-GGaaUGUCGg -3'
miRNA:   3'- -GGCU----UGCCCG-UUCCGCuauCC--ACAGU- -5'
10885 3' -53.9 NC_002794.1 + 113746 0.66 0.977942
Target:  5'- aCCGGACcaGGCGc-GCGA-GGGUGUCGg -3'
miRNA:   3'- -GGCUUGc-CCGUucCGCUaUCCACAGU- -5'
10885 3' -53.9 NC_002794.1 + 96091 0.66 0.975534
Target:  5'- gCCG-ACGGGCGuaccuggaaaGGGuCGAcgGGGUgGUCGa -3'
miRNA:   3'- -GGCuUGCCCGU----------UCC-GCUa-UCCA-CAGU- -5'
10885 3' -53.9 NC_002794.1 + 149779 0.66 0.975534
Target:  5'- -gGAGCGGGCGuacGGGUGGUGcGUGg-- -3'
miRNA:   3'- ggCUUGCCCGU---UCCGCUAUcCACagu -5'
10885 3' -53.9 NC_002794.1 + 31739 0.66 0.973737
Target:  5'- aCCGGGCGGGCGAacgaagcGGuCGAUGuacucgaugugcuccGGgGUCAg -3'
miRNA:   3'- -GGCUUGCCCGUU-------CC-GCUAU---------------CCaCAGU- -5'
10885 3' -53.9 NC_002794.1 + 147580 0.67 0.97015
Target:  5'- gCCGAGCGGcacacCGAGGCGcucgcGGUGUgCAa -3'
miRNA:   3'- -GGCUUGCCc----GUUCCGCuau--CCACA-GU- -5'
10885 3' -53.9 NC_002794.1 + 159891 0.67 0.966851
Target:  5'- aUCGGA-GGGCGGGGUagcgaagGGUAGGUggGUCGg -3'
miRNA:   3'- -GGCUUgCCCGUUCCG-------CUAUCCA--CAGU- -5'
10885 3' -53.9 NC_002794.1 + 54640 0.67 0.963967
Target:  5'- aCCGcGGCGGGCAGaaaGA-AGGUGUCGa -3'
miRNA:   3'- -GGC-UUGCCCGUUccgCUaUCCACAGU- -5'
10885 3' -53.9 NC_002794.1 + 149830 0.67 0.960562
Target:  5'- cCCGAggACGGGCGGGGaCGAggacgGGGa---- -3'
miRNA:   3'- -GGCU--UGCCCGUUCC-GCUa----UCCacagu -5'
10885 3' -53.9 NC_002794.1 + 101593 0.67 0.959499
Target:  5'- gCCGGGgGGGCGggugccggcccgccGGGCGG-GGGUGcCGu -3'
miRNA:   3'- -GGCUUgCCCGU--------------UCCGCUaUCCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 145344 0.67 0.956941
Target:  5'- cCCGAGCGGGCc---CGAgcuggGGGUGUg- -3'
miRNA:   3'- -GGCUUGCCCGuuccGCUa----UCCACAgu -5'
10885 3' -53.9 NC_002794.1 + 76791 0.68 0.949033
Target:  5'- gCCGGGCGGGCGAgcGGCGAccaccGGaccggacGUCAc -3'
miRNA:   3'- -GGCUUGCCCGUU--CCGCUau---CCa------CAGU- -5'
10885 3' -53.9 NC_002794.1 + 143409 0.68 0.94474
Target:  5'- aCCGGcGCGGGCcGGGCGA-AGGUc--- -3'
miRNA:   3'- -GGCU-UGCCCGuUCCGCUaUCCAcagu -5'
10885 3' -53.9 NC_002794.1 + 21865 0.68 0.940217
Target:  5'- uUGAACGGuccGCGAGGCcGGccgcgGGGUGUCc -3'
miRNA:   3'- gGCUUGCC---CGUUCCG-CUa----UCCACAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.