Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10885 | 3' | -53.9 | NC_002794.1 | + | 22312 | 1.11 | 0.004584 |
Target: 5'- aCCGAACGGGCAAGGCGAUAGGUGUCAa -3' miRNA: 3'- -GGCUUGCCCGUUCCGCUAUCCACAGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 10882 | 0.77 | 0.537814 |
Target: 5'- aCCGAcgACGGGC-GGGCGG-AGGUGUUu -3' miRNA: 3'- -GGCU--UGCCCGuUCCGCUaUCCACAGu -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 143339 | 0.74 | 0.698586 |
Target: 5'- cUCGGgcaGCGGGCucGGGCGAUAGGggaUCAg -3' miRNA: 3'- -GGCU---UGCCCGu-UCCGCUAUCCac-AGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 9739 | 0.74 | 0.708515 |
Target: 5'- aCCGggUGGGU-AGGUGggGGGgggGUCAg -3' miRNA: 3'- -GGCuuGCCCGuUCCGCuaUCCa--CAGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 87132 | 0.73 | 0.757029 |
Target: 5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3' miRNA: 3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 87216 | 0.73 | 0.757029 |
Target: 5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3' miRNA: 3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 87174 | 0.73 | 0.757029 |
Target: 5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3' miRNA: 3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 87090 | 0.73 | 0.757029 |
Target: 5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3' miRNA: 3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 182302 | 0.73 | 0.766443 |
Target: 5'- gUGGACGGGCAgacGGGCGGacGGGcgGUCGg -3' miRNA: 3'- gGCUUGCCCGU---UCCGCUa-UCCa-CAGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 87258 | 0.71 | 0.820165 |
Target: 5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUGg-- -3' miRNA: 3'- -GGCUUGCCCGU------------UCCGCUa---UCCACagu -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 171124 | 0.71 | 0.836819 |
Target: 5'- gCGAGgGGGCGAGGaCGAUccGGUG-CAa -3' miRNA: 3'- gGCUUgCCCGUUCC-GCUAu-CCACaGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 128398 | 0.71 | 0.836819 |
Target: 5'- cCCGGAUGGGCGAGGgGAccgGGGa---- -3' miRNA: 3'- -GGCUUGCCCGUUCCgCUa--UCCacagu -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 127917 | 0.71 | 0.836819 |
Target: 5'- aCCGAGgGGGCGGGGauucggGGcGUGUCGg -3' miRNA: 3'- -GGCUUgCCCGUUCCgcua--UC-CACAGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 182334 | 0.71 | 0.844078 |
Target: 5'- gCGGGCGGGCGagcggacGGGCGGgcGGGUGa-- -3' miRNA: 3'- gGCUUGCCCGU-------UCCGCUa-UCCACagu -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 104514 | 0.71 | 0.852743 |
Target: 5'- -aGAACGGGCuGAGGCGc-GGGUGgcgCGg -3' miRNA: 3'- ggCUUGCCCG-UUCCGCuaUCCACa--GU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 102671 | 0.7 | 0.895635 |
Target: 5'- gCCGAGCGu---GGGCGAccGGGUGUCGu -3' miRNA: 3'- -GGCUUGCccguUCCGCUa-UCCACAGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 4154 | 0.69 | 0.907569 |
Target: 5'- cCCGGACgacgaGGGUAGGggucgucGCGGUGGGUcGUCGa -3' miRNA: 3'- -GGCUUG-----CCCGUUC-------CGCUAUCCA-CAGU- -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 126711 | 0.69 | 0.914098 |
Target: 5'- gCGGACucgGGGCgAGGGgGGUGGGUGg-- -3' miRNA: 3'- gGCUUG---CCCG-UUCCgCUAUCCACagu -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 103220 | 0.69 | 0.91979 |
Target: 5'- gUGGACGGGaCGAGGCGcuggcAGGUGa-- -3' miRNA: 3'- gGCUUGCCC-GUUCCGCua---UCCACagu -5' |
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10885 | 3' | -53.9 | NC_002794.1 | + | 8115 | 0.68 | 0.935461 |
Target: 5'- aCCGAGCGGGCGGcGGCcuccucGGUGa-- -3' miRNA: 3'- -GGCUUGCCCGUU-CCGcuau--CCACagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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