miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 3' -53.9 NC_002794.1 + 21865 0.68 0.940217
Target:  5'- uUGAACGGuccGCGAGGCcGGccgcgGGGUGUCc -3'
miRNA:   3'- gGCUUGCC---CGUUCCG-CUa----UCCACAGu -5'
10885 3' -53.9 NC_002794.1 + 19448 0.68 0.940217
Target:  5'- cCCGAGCGGGCAcgagcggcggcGGCGGcGGGacccgccgGUCGc -3'
miRNA:   3'- -GGCUUGCCCGUu----------CCGCUaUCCa-------CAGU- -5'
10885 3' -53.9 NC_002794.1 + 145924 0.68 0.935461
Target:  5'- gCCGAGCGgaggggccGGCGAGaGCGGUucGGGaGUCGc -3'
miRNA:   3'- -GGCUUGC--------CCGUUC-CGCUA--UCCaCAGU- -5'
10885 3' -53.9 NC_002794.1 + 8115 0.68 0.935461
Target:  5'- aCCGAGCGGGCGGcGGCcuccucGGUGa-- -3'
miRNA:   3'- -GGCUUGCCCGUU-CCGcuau--CCACagu -5'
10885 3' -53.9 NC_002794.1 + 103220 0.69 0.91979
Target:  5'- gUGGACGGGaCGAGGCGcuggcAGGUGa-- -3'
miRNA:   3'- gGCUUGCCC-GUUCCGCua---UCCACagu -5'
10885 3' -53.9 NC_002794.1 + 126711 0.69 0.914098
Target:  5'- gCGGACucgGGGCgAGGGgGGUGGGUGg-- -3'
miRNA:   3'- gGCUUG---CCCG-UUCCgCUAUCCACagu -5'
10885 3' -53.9 NC_002794.1 + 4154 0.69 0.907569
Target:  5'- cCCGGACgacgaGGGUAGGggucgucGCGGUGGGUcGUCGa -3'
miRNA:   3'- -GGCUUG-----CCCGUUC-------CGCUAUCCA-CAGU- -5'
10885 3' -53.9 NC_002794.1 + 102671 0.7 0.895635
Target:  5'- gCCGAGCGu---GGGCGAccGGGUGUCGu -3'
miRNA:   3'- -GGCUUGCccguUCCGCUa-UCCACAGU- -5'
10885 3' -53.9 NC_002794.1 + 104514 0.71 0.852743
Target:  5'- -aGAACGGGCuGAGGCGc-GGGUGgcgCGg -3'
miRNA:   3'- ggCUUGCCCG-UUCCGCuaUCCACa--GU- -5'
10885 3' -53.9 NC_002794.1 + 182334 0.71 0.844078
Target:  5'- gCGGGCGGGCGagcggacGGGCGGgcGGGUGa-- -3'
miRNA:   3'- gGCUUGCCCGU-------UCCGCUa-UCCACagu -5'
10885 3' -53.9 NC_002794.1 + 127917 0.71 0.836819
Target:  5'- aCCGAGgGGGCGGGGauucggGGcGUGUCGg -3'
miRNA:   3'- -GGCUUgCCCGUUCCgcua--UC-CACAGU- -5'
10885 3' -53.9 NC_002794.1 + 171124 0.71 0.836819
Target:  5'- gCGAGgGGGCGAGGaCGAUccGGUG-CAa -3'
miRNA:   3'- gGCUUgCCCGUUCC-GCUAu-CCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 128398 0.71 0.836819
Target:  5'- cCCGGAUGGGCGAGGgGAccgGGGa---- -3'
miRNA:   3'- -GGCUUGCCCGUUCCgCUa--UCCacagu -5'
10885 3' -53.9 NC_002794.1 + 87258 0.71 0.820165
Target:  5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUGg-- -3'
miRNA:   3'- -GGCUUGCCCGU------------UCCGCUa---UCCACagu -5'
10885 3' -53.9 NC_002794.1 + 182302 0.73 0.766443
Target:  5'- gUGGACGGGCAgacGGGCGGacGGGcgGUCGg -3'
miRNA:   3'- gGCUUGCCCGU---UCCGCUa-UCCa-CAGU- -5'
10885 3' -53.9 NC_002794.1 + 87216 0.73 0.757029
Target:  5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3'
miRNA:   3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 87174 0.73 0.757029
Target:  5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3'
miRNA:   3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 87132 0.73 0.757029
Target:  5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3'
miRNA:   3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 87090 0.73 0.757029
Target:  5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3'
miRNA:   3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 9739 0.74 0.708515
Target:  5'- aCCGggUGGGU-AGGUGggGGGgggGUCAg -3'
miRNA:   3'- -GGCuuGCCCGuUCCGCuaUCCa--CAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.