miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 3' -53.9 NC_002794.1 + 113746 0.66 0.977942
Target:  5'- aCCGGACcaGGCGc-GCGA-GGGUGUCGg -3'
miRNA:   3'- -GGCUUGc-CCGUucCGCUaUCCACAGU- -5'
10885 3' -53.9 NC_002794.1 + 104514 0.71 0.852743
Target:  5'- -aGAACGGGCuGAGGCGc-GGGUGgcgCGg -3'
miRNA:   3'- ggCUUGCCCG-UUCCGCuaUCCACa--GU- -5'
10885 3' -53.9 NC_002794.1 + 103220 0.69 0.91979
Target:  5'- gUGGACGGGaCGAGGCGcuggcAGGUGa-- -3'
miRNA:   3'- gGCUUGCCC-GUUCCGCua---UCCACagu -5'
10885 3' -53.9 NC_002794.1 + 102671 0.7 0.895635
Target:  5'- gCCGAGCGu---GGGCGAccGGGUGUCGu -3'
miRNA:   3'- -GGCUUGCccguUCCGCUa-UCCACAGU- -5'
10885 3' -53.9 NC_002794.1 + 101593 0.67 0.959499
Target:  5'- gCCGGGgGGGCGggugccggcccgccGGGCGG-GGGUGcCGu -3'
miRNA:   3'- -GGCUUgCCCGU--------------UCCGCUaUCCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 96091 0.66 0.975534
Target:  5'- gCCG-ACGGGCGuaccuggaaaGGGuCGAcgGGGUgGUCGa -3'
miRNA:   3'- -GGCuUGCCCGU----------UCC-GCUa-UCCA-CAGU- -5'
10885 3' -53.9 NC_002794.1 + 87258 0.71 0.820165
Target:  5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUGg-- -3'
miRNA:   3'- -GGCUUGCCCGU------------UCCGCUa---UCCACagu -5'
10885 3' -53.9 NC_002794.1 + 87216 0.73 0.757029
Target:  5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3'
miRNA:   3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 87174 0.73 0.757029
Target:  5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3'
miRNA:   3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 87132 0.73 0.757029
Target:  5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3'
miRNA:   3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 87090 0.73 0.757029
Target:  5'- gCCGGGCGGGUGggggugcaggccGGGCGGguggGGGUG-CAg -3'
miRNA:   3'- -GGCUUGCCCGU------------UCCGCUa---UCCACaGU- -5'
10885 3' -53.9 NC_002794.1 + 78326 0.66 0.977942
Target:  5'- cCCGGcgcgACGGGCgGAGGCGcc-GGaaUGUCGg -3'
miRNA:   3'- -GGCU----UGCCCG-UUCCGCuauCC--ACAGU- -5'
10885 3' -53.9 NC_002794.1 + 76791 0.68 0.949033
Target:  5'- gCCGGGCGGGCGAgcGGCGAccaccGGaccggacGUCAc -3'
miRNA:   3'- -GGCUUGCCCGUU--CCGCUau---CCa------CAGU- -5'
10885 3' -53.9 NC_002794.1 + 70484 0.66 0.980171
Target:  5'- cCCGAuguCgGGGCAGGGCGAccgacAGGagccgGUCc -3'
miRNA:   3'- -GGCUu--G-CCCGUUCCGCUa----UCCa----CAGu -5'
10885 3' -53.9 NC_002794.1 + 54640 0.67 0.963967
Target:  5'- aCCGcGGCGGGCAGaaaGA-AGGUGUCGa -3'
miRNA:   3'- -GGC-UUGCCCGUUccgCUaUCCACAGU- -5'
10885 3' -53.9 NC_002794.1 + 31739 0.66 0.973737
Target:  5'- aCCGGGCGGGCGAacgaagcGGuCGAUGuacucgaugugcuccGGgGUCAg -3'
miRNA:   3'- -GGCUUGCCCGUU-------CC-GCUAU---------------CCaCAGU- -5'
10885 3' -53.9 NC_002794.1 + 22312 1.11 0.004584
Target:  5'- aCCGAACGGGCAAGGCGAUAGGUGUCAa -3'
miRNA:   3'- -GGCUUGCCCGUUCCGCUAUCCACAGU- -5'
10885 3' -53.9 NC_002794.1 + 21865 0.68 0.940217
Target:  5'- uUGAACGGuccGCGAGGCcGGccgcgGGGUGUCc -3'
miRNA:   3'- gGCUUGCC---CGUUCCG-CUa----UCCACAGu -5'
10885 3' -53.9 NC_002794.1 + 19448 0.68 0.940217
Target:  5'- cCCGAGCGGGCAcgagcggcggcGGCGGcGGGacccgccgGUCGc -3'
miRNA:   3'- -GGCUUGCCCGUu----------CCGCUaUCCa-------CAGU- -5'
10885 3' -53.9 NC_002794.1 + 10882 0.77 0.537814
Target:  5'- aCCGAcgACGGGC-GGGCGG-AGGUGUUu -3'
miRNA:   3'- -GGCU--UGCCCGuUCCGCUaUCCACAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.