miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 111128 0.66 0.578717
Target:  5'- gGCGCCgGCGGCCggugCUCCaCGCg-- -3'
miRNA:   3'- gCGCGGgCGUCGGgga-GAGG-GCGagu -5'
10885 5' -65.3 NC_002794.1 + 68109 0.66 0.578717
Target:  5'- cCGUGUugaaCCGCGGCCUCgagaUCCUGCUg- -3'
miRNA:   3'- -GCGCG----GGCGUCGGGGag--AGGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 40572 0.66 0.578717
Target:  5'- uCGCGCCguccuggcCGCGGgCCCUCUCCUcCg-- -3'
miRNA:   3'- -GCGCGG--------GCGUCgGGGAGAGGGcGagu -5'
10885 5' -65.3 NC_002794.1 + 46500 0.66 0.578717
Target:  5'- uCGgGCUCGCGcacGCCUgUaauagugugugcCUCCCGCUCGu -3'
miRNA:   3'- -GCgCGGGCGU---CGGGgA------------GAGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 186490 0.66 0.578717
Target:  5'- aGgGCCCgGCGGCgCgCCUC-CCCGC-CGu -3'
miRNA:   3'- gCgCGGG-CGUCG-G-GGAGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 62302 0.66 0.573079
Target:  5'- cCGaGCCCGCGcgcagacggaaaaccGCCCCUCgcuggcggagCCCGCg-- -3'
miRNA:   3'- -GCgCGGGCGU---------------CGGGGAGa---------GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 90203 0.66 0.569327
Target:  5'- gGUGCCCGC-GCCuCCg--CCCGC-CGc -3'
miRNA:   3'- gCGCGGGCGuCGG-GGagaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 189137 0.66 0.559975
Target:  5'- gCGgGgCCGCcagcGCCagaCUCUCCCGCggCAg -3'
miRNA:   3'- -GCgCgGGCGu---CGGg--GAGAGGGCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 82804 0.66 0.559975
Target:  5'- aCGCGCgCCGCGaCCCgCgg-CUCGCUCGa -3'
miRNA:   3'- -GCGCG-GGCGUcGGG-GagaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 83230 0.66 0.559975
Target:  5'- uCGCGCUCGCGGacgagaCgCUCUCCUacCUCAa -3'
miRNA:   3'- -GCGCGGGCGUCg-----GgGAGAGGGc-GAGU- -5'
10885 5' -65.3 NC_002794.1 + 83008 0.66 0.559975
Target:  5'- aCGCGCCCGaucugcGCCCCg-UCCCGg--- -3'
miRNA:   3'- -GCGCGGGCgu----CGGGGagAGGGCgagu -5'
10885 5' -65.3 NC_002794.1 + 83899 0.66 0.559975
Target:  5'- gGCGCCCGacgagccCGGCaCCCUCgccgacagacgagaCCGCUUAg -3'
miRNA:   3'- gCGCGGGC-------GUCG-GGGAGag------------GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 29755 0.66 0.559975
Target:  5'- gCGCcgaGCCCGCgccgAGCgUCUCggCCGCUCGa -3'
miRNA:   3'- -GCG---CGGGCG----UCGgGGAGagGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 191805 0.66 0.558109
Target:  5'- -cCGCCCGCucGGCCgCUCgaggaccgcgagCUCGCUCGa -3'
miRNA:   3'- gcGCGGGCG--UCGGgGAGa-----------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 168 0.66 0.550666
Target:  5'- -aCGCCCGC-GCCCCcaaacacgCUCUCGCa-- -3'
miRNA:   3'- gcGCGGGCGuCGGGGa-------GAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 193288 0.66 0.550666
Target:  5'- uGCGCCgGUAGUCgCCg--UCCGCUCc -3'
miRNA:   3'- gCGCGGgCGUCGG-GGagaGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 100563 0.66 0.550666
Target:  5'- cCGUGgCCgaGCGGCaCCUCUUCaCGCUCGg -3'
miRNA:   3'- -GCGCgGG--CGUCGgGGAGAGG-GCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 57948 0.66 0.550666
Target:  5'- aCGCGCUgCGCAGCCUgUgccaCCCGCUg- -3'
miRNA:   3'- -GCGCGG-GCGUCGGGgAga--GGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 60889 0.66 0.550666
Target:  5'- gGCG-CCGUGGUCCCcaUCCCGUUCc -3'
miRNA:   3'- gCGCgGGCGUCGGGGagAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 35448 0.66 0.550666
Target:  5'- aGCuGCCUGCGGCUgaucgccagcugCCUCUaCCUGUUCu -3'
miRNA:   3'- gCG-CGGGCGUCGG------------GGAGA-GGGCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.