miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 186490 0.66 0.578717
Target:  5'- aGgGCCCgGCGGCgCgCCUC-CCCGC-CGu -3'
miRNA:   3'- gCgCGGG-CGUCG-G-GGAGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 62302 0.66 0.573079
Target:  5'- cCGaGCCCGCGcgcagacggaaaaccGCCCCUCgcuggcggagCCCGCg-- -3'
miRNA:   3'- -GCgCGGGCGU---------------CGGGGAGa---------GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 90203 0.66 0.569327
Target:  5'- gGUGCCCGC-GCCuCCg--CCCGC-CGc -3'
miRNA:   3'- gCGCGGGCGuCGG-GGagaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 29755 0.66 0.559975
Target:  5'- gCGCcgaGCCCGCgccgAGCgUCUCggCCGCUCGa -3'
miRNA:   3'- -GCG---CGGGCG----UCGgGGAGagGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 193288 0.66 0.550666
Target:  5'- uGCGCCgGUAGUCgCCg--UCCGCUCc -3'
miRNA:   3'- gCGCGGgCGUCGG-GGagaGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 189137 0.66 0.559975
Target:  5'- gCGgGgCCGCcagcGCCagaCUCUCCCGCggCAg -3'
miRNA:   3'- -GCgCgGGCGu---CGGg--GAGAGGGCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 82804 0.66 0.559975
Target:  5'- aCGCGCgCCGCGaCCCgCgg-CUCGCUCGa -3'
miRNA:   3'- -GCGCG-GGCGUcGGG-GagaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 83230 0.66 0.559975
Target:  5'- uCGCGCUCGCGGacgagaCgCUCUCCUacCUCAa -3'
miRNA:   3'- -GCGCGGGCGUCg-----GgGAGAGGGc-GAGU- -5'
10885 5' -65.3 NC_002794.1 + 83008 0.66 0.559975
Target:  5'- aCGCGCCCGaucugcGCCCCg-UCCCGg--- -3'
miRNA:   3'- -GCGCGGGCgu----CGGGGagAGGGCgagu -5'
10885 5' -65.3 NC_002794.1 + 83899 0.66 0.559975
Target:  5'- gGCGCCCGacgagccCGGCaCCCUCgccgacagacgagaCCGCUUAg -3'
miRNA:   3'- gCGCGGGC-------GUCG-GGGAGag------------GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 187517 0.67 0.504929
Target:  5'- gGCGCCCGCGGaggaaCUC-CCCGC-CGc -3'
miRNA:   3'- gCGCGGGCGUCggg--GAGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 151604 0.67 0.504929
Target:  5'- gCGgGCCCGCGGUUCCUCggcugacggCCgGCa-- -3'
miRNA:   3'- -GCgCGGGCGUCGGGGAGa--------GGgCGagu -5'
10885 5' -65.3 NC_002794.1 + 61127 0.67 0.504929
Target:  5'- uCGUGCuCUGCGcGCCCCUgCUgCCGCcCGa -3'
miRNA:   3'- -GCGCG-GGCGU-CGGGGA-GAgGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 145773 0.67 0.504929
Target:  5'- aGCGCCaCGCGGagucguCCCCgg-CCgGCUCGg -3'
miRNA:   3'- gCGCGG-GCGUC------GGGGagaGGgCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 90723 0.67 0.504929
Target:  5'- aCGUGCUCGCGGCCCUgucgCUgugcgaCCGgUCGu -3'
miRNA:   3'- -GCGCGGGCGUCGGGGa---GAg-----GGCgAGU- -5'
10885 5' -65.3 NC_002794.1 + 191520 0.67 0.513954
Target:  5'- aGCGCCgggCGuCGGCCCgCgcCUCCCGCcgCAg -3'
miRNA:   3'- gCGCGG---GC-GUCGGG-Ga-GAGGGCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 64284 0.67 0.513954
Target:  5'- gGCGCucuacgcccaCCGCGGCCCCg-UCgUGCUCc -3'
miRNA:   3'- gCGCG----------GGCGUCGGGGagAGgGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 111756 0.67 0.513954
Target:  5'- gGCGCCgCGCGGCgCCgUCggggcgggCUCGUUCGu -3'
miRNA:   3'- gCGCGG-GCGUCG-GGgAGa-------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 187042 0.67 0.513954
Target:  5'- cCG-GCUCGCAGUCCCggagCCCGCg-- -3'
miRNA:   3'- -GCgCGGGCGUCGGGGaga-GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 137092 0.67 0.504929
Target:  5'- uGuCGCCCGCucgcGCUCCUuccgcgacCUCCCGCcCGa -3'
miRNA:   3'- gC-GCGGGCGu---CGGGGA--------GAGGGCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.