miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 13355 0.68 0.410896
Target:  5'- gGCGCCCcucGCccgGGCCCUcCUCCCcCUCGa -3'
miRNA:   3'- gCGCGGG---CG---UCGGGGaGAGGGcGAGU- -5'
10885 5' -65.3 NC_002794.1 + 68918 0.68 0.418997
Target:  5'- gGgGCUCGCGGCgUCCUCgucgCCCGCg-- -3'
miRNA:   3'- gCgCGGGCGUCG-GGGAGa---GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 68841 0.68 0.418997
Target:  5'- gGCGCUCGCGGUCCC-CgacgaCCCcggaGCUCGg -3'
miRNA:   3'- gCGCGGGCGUCGGGGaGa----GGG----CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 113263 0.68 0.427195
Target:  5'- gCGCGUCCGCccgcucGGCCag-CUCCCGCg-- -3'
miRNA:   3'- -GCGCGGGCG------UCGGggaGAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 58884 0.68 0.435487
Target:  5'- gCGCGCCgCGCAGCUCgaggCCCGCa-- -3'
miRNA:   3'- -GCGCGG-GCGUCGGGgagaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 126445 0.68 0.452345
Target:  5'- gGCGCCU-CGGCCCUgggUCCgGCUCGu -3'
miRNA:   3'- gCGCGGGcGUCGGGGag-AGGgCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 131392 0.68 0.443871
Target:  5'- cCGCGCCCGUcaucacGGCCUCg--CCCGUgaUCGg -3'
miRNA:   3'- -GCGCGGGCG------UCGGGGagaGGGCG--AGU- -5'
10885 5' -65.3 NC_002794.1 + 55062 0.68 0.452345
Target:  5'- aGCGCgCCGUcGCCCCcggUC-CCCGC-CAg -3'
miRNA:   3'- gCGCG-GGCGuCGGGG---AGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 85074 0.68 0.435487
Target:  5'- cCGCGUCUGC-GCCCCcggucUCUCaCCGCa-- -3'
miRNA:   3'- -GCGCGGGCGuCGGGG-----AGAG-GGCGagu -5'
10885 5' -65.3 NC_002794.1 + 183463 0.68 0.438829
Target:  5'- gGCGCCCGCccgccgcgaguccgcGGCCCgaUC-CCCGCg-- -3'
miRNA:   3'- gCGCGGGCG---------------UCGGGg-AGaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 115092 0.68 0.443871
Target:  5'- gGcCGCCCGCAGCCgCgcgUCCGCgUCGu -3'
miRNA:   3'- gC-GCGGGCGUCGGgGagaGGGCG-AGU- -5'
10885 5' -65.3 NC_002794.1 + 19340 0.68 0.435487
Target:  5'- gCGCGCCgGuCAcCCCCUCgccgCCCGCc-- -3'
miRNA:   3'- -GCGCGGgC-GUcGGGGAGa---GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 41384 0.69 0.379485
Target:  5'- gGCGCCUccuucgGCGGCCCCgauuUC-CCCGuCUCGc -3'
miRNA:   3'- gCGCGGG------CGUCGGGG----AGaGGGC-GAGU- -5'
10885 5' -65.3 NC_002794.1 + 59590 0.69 0.394204
Target:  5'- gCGCacuGCCCGCAGCagCUCUCCUccgugcuggcgcuGCUCGc -3'
miRNA:   3'- -GCG---CGGGCGUCGggGAGAGGG-------------CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 113233 0.69 0.394989
Target:  5'- gGCGaCCGCcGUCCaggaUCUCCCGCUgCAg -3'
miRNA:   3'- gCGCgGGCGuCGGGg---AGAGGGCGA-GU- -5'
10885 5' -65.3 NC_002794.1 + 57502 0.69 0.394989
Target:  5'- gCGCGCCCGCcGCCUacggcgagUUCgUGCUCAg -3'
miRNA:   3'- -GCGCGGGCGuCGGGga------GAGgGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 59052 0.69 0.379485
Target:  5'- cCGCGCCUGCGGCCugggccugcaCCUCaagacCCUGCUg- -3'
miRNA:   3'- -GCGCGGGCGUCGG----------GGAGa----GGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 59272 0.69 0.402893
Target:  5'- gCGCGCCUGCuGGagaUCCgCUCgCCGCUCGa -3'
miRNA:   3'- -GCGCGGGCG-UCg--GGGaGAG-GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 157006 0.69 0.394989
Target:  5'- gCGgGCCCGCGGCCagCCggCUUauUCGCUCGu -3'
miRNA:   3'- -GCgCGGGCGUCGG--GGa-GAG--GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 24026 0.69 0.379485
Target:  5'- gGCGCCUcggcgacgGCGGUCCCUC-CCCGUcCGc -3'
miRNA:   3'- gCGCGGG--------CGUCGGGGAGaGGGCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.