miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 113233 0.69 0.394989
Target:  5'- gGCGaCCGCcGUCCaggaUCUCCCGCUgCAg -3'
miRNA:   3'- gCGCgGGCGuCGGGg---AGAGGGCGA-GU- -5'
10885 5' -65.3 NC_002794.1 + 57502 0.69 0.394989
Target:  5'- gCGCGCCCGCcGCCUacggcgagUUCgUGCUCAg -3'
miRNA:   3'- -GCGCGGGCGuCGGGga------GAGgGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 59052 0.69 0.379485
Target:  5'- cCGCGCCUGCGGCCugggccugcaCCUCaagacCCUGCUg- -3'
miRNA:   3'- -GCGCGGGCGUCGG----------GGAGa----GGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 59272 0.69 0.402893
Target:  5'- gCGCGCCUGCuGGagaUCCgCUCgCCGCUCGa -3'
miRNA:   3'- -GCGCGGGCG-UCg--GGGaGAG-GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 157006 0.69 0.394989
Target:  5'- gCGgGCCCGCGGCCagCCggCUUauUCGCUCGu -3'
miRNA:   3'- -GCgCGGGCGUCGG--GGa-GAG--GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 118779 0.69 0.402893
Target:  5'- aCGCGCuCCGUcaGGCUCCgcagCgucgCCCGCUUg -3'
miRNA:   3'- -GCGCG-GGCG--UCGGGGa---Ga---GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 85010 0.7 0.321662
Target:  5'- cCGCGCUCgGguGCCCCgggC-CCaCGCUCGg -3'
miRNA:   3'- -GCGCGGG-CguCGGGGa--GaGG-GCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 32169 0.7 0.321662
Target:  5'- gGUgGCCCGCcuGGCCCCggUCCCGCa-- -3'
miRNA:   3'- gCG-CGGGCG--UCGGGGagAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 99608 0.7 0.314915
Target:  5'- gCGCGCUCGC-GCCgCCUCggcCCCGUUUc -3'
miRNA:   3'- -GCGCGGGCGuCGG-GGAGa--GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 14507 0.7 0.314915
Target:  5'- cCGCGCUCGCGGCgCUCguggCgCCGCUCGg -3'
miRNA:   3'- -GCGCGGGCGUCG-GGGaga-G-GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 81954 0.7 0.321662
Target:  5'- uGCGCCauCGCGGCgCCCg--CCCGCUUc -3'
miRNA:   3'- gCGCGG--GCGUCG-GGGagaGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 190592 0.7 0.321662
Target:  5'- uCGCG-CCGCAGCUCCUCcaggUCCGCg-- -3'
miRNA:   3'- -GCGCgGGCGUCGGGGAGa---GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 18618 0.7 0.335478
Target:  5'- gGCaCCgGCcGCCCCUCcgacgCCCGCUCc -3'
miRNA:   3'- gCGcGGgCGuCGGGGAGa----GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 65423 0.7 0.335478
Target:  5'- aCGCGCCUGCccacccuccgGGuUUCCUCUCCCgagcGCUCAc -3'
miRNA:   3'- -GCGCGGGCG----------UC-GGGGAGAGGG----CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 72370 0.7 0.349723
Target:  5'- gCGCGUCCGCGGCCCCgg--CCGUcgUCu -3'
miRNA:   3'- -GCGCGGGCGUCGGGGagagGGCG--AGu -5'
10885 5' -65.3 NC_002794.1 + 63368 0.7 0.349723
Target:  5'- cCGuCGCCCGCGccgcuGCCCCgccgC-CCCGCUg- -3'
miRNA:   3'- -GC-GCGGGCGU-----CGGGGa---GaGGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 31340 0.71 0.289
Target:  5'- gGCGCCCGCcguGUCCgccgCCCGCUCGu -3'
miRNA:   3'- gCGCGGGCGu--CGGGgagaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 194830 0.71 0.301743
Target:  5'- gCGCGCUCGCGGCCCggcgUCUCCaGCcgCAc -3'
miRNA:   3'- -GCGCGGGCGUCGGGg---AGAGGgCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 50727 0.71 0.301743
Target:  5'- uCGcCGCCCgggGCGGCCgCCUCgaCUCGCUCGu -3'
miRNA:   3'- -GC-GCGGG---CGUCGG-GGAGa-GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 41254 0.71 0.295318
Target:  5'- cCGaCGCCgGCGGCCCgUCgUCgCGCUCc -3'
miRNA:   3'- -GC-GCGGgCGUCGGGgAG-AGgGCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.