miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 22347 1.07 0.000729
Target:  5'- aCGCGCCCGCAGCCCCUCUCCCGCUCAc -3'
miRNA:   3'- -GCGCGGGCGUCGGGGAGAGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 80462 0.76 0.132132
Target:  5'- gGCgGCCCGCuGCCCgUCUUCCGCgUCGa -3'
miRNA:   3'- gCG-CGGGCGuCGGGgAGAGGGCG-AGU- -5'
10885 5' -65.3 NC_002794.1 + 124417 0.76 0.135344
Target:  5'- gGCGCcguccgCCGCGGUCUCUCUCCCGCg-- -3'
miRNA:   3'- gCGCG------GGCGUCGGGGAGAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 49887 0.76 0.135344
Target:  5'- aGCGCCCGCAGCCCCgaaacacggCguagggcaacgUCCGCUCc -3'
miRNA:   3'- gCGCGGGCGUCGGGGa--------Ga----------GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 72721 0.75 0.15617
Target:  5'- cCGUGCCCaugaCGGCCCCgcgCUCCCGCg-- -3'
miRNA:   3'- -GCGCGGGc---GUCGGGGa--GAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 59922 0.75 0.148924
Target:  5'- gGCGCCCGCGuGCaggaCCUCUUCCGCg-- -3'
miRNA:   3'- gCGCGGGCGU-CGg---GGAGAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 49617 0.74 0.197365
Target:  5'- gGCGCCgGCGGCgCCUCgCCCGCc-- -3'
miRNA:   3'- gCGCGGgCGUCGgGGAGaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 55522 0.74 0.192853
Target:  5'- aCGCcaGCCCgGCGGCCCCgucgccCUCCCGUUUg -3'
miRNA:   3'- -GCG--CGGG-CGUCGGGGa-----GAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 191186 0.73 0.226411
Target:  5'- uCGCGCUCGCccGGCCgCC-CgCCCGCUCGc -3'
miRNA:   3'- -GCGCGGGCG--UCGG-GGaGaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 62741 0.73 0.20197
Target:  5'- cCGcCGCCCGCGGCCgUCUCgcUCCgGCUCc -3'
miRNA:   3'- -GC-GCGGGCGUCGG-GGAG--AGGgCGAGu -5'
10885 5' -65.3 NC_002794.1 + 136321 0.73 0.200579
Target:  5'- aGCGCCCGCAGCUCUUCUCgguggcgggCCagcguggcguugagGCUCAg -3'
miRNA:   3'- gCGCGGGCGUCGGGGAGAG---------GG--------------CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 68657 0.72 0.258999
Target:  5'- aCGUuauCCCGCAGCCCUcC-CCCGCUCc -3'
miRNA:   3'- -GCGc--GGGCGUCGGGGaGaGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 105440 0.72 0.23687
Target:  5'- cCGCGCCgGCGGCgCCgUCguucugCCCGUUCu -3'
miRNA:   3'- -GCGCGGgCGUCG-GGgAGa-----GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 193758 0.72 0.23687
Target:  5'- aGCGaCCGcCGGCCCCgcUCgcucgCCCGCUCGa -3'
miRNA:   3'- gCGCgGGC-GUCGGGG--AGa----GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 103023 0.72 0.24773
Target:  5'- -cCGCCCGcCAGCCCCgcucUCUCCCcCUCc -3'
miRNA:   3'- gcGCGGGC-GUCGGGG----AGAGGGcGAGu -5'
10885 5' -65.3 NC_002794.1 + 70351 0.72 0.242249
Target:  5'- gGCGCCCGCucguccGCCCa---CCCGCUCGc -3'
miRNA:   3'- gCGCGGGCGu-----CGGGgagaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 53422 0.71 0.308275
Target:  5'- aGCgGCCCGCucucGCUCgCcCUCCCGCUCu -3'
miRNA:   3'- gCG-CGGGCGu---CGGG-GaGAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 194153 0.71 0.270089
Target:  5'- aGCGCCCGCgAGCCCUgccggcgcgccuUCUCCguccgcaCGUUCAc -3'
miRNA:   3'- gCGCGGGCG-UCGGGG------------AGAGG-------GCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 31340 0.71 0.289
Target:  5'- gGCGCCCGCcguGUCCgccgCCCGCUCGu -3'
miRNA:   3'- gCGCGGGCGu--CGGGgagaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 41254 0.71 0.295318
Target:  5'- cCGaCGCCgGCGGCCCgUCgUCgCGCUCc -3'
miRNA:   3'- -GC-GCGGgCGUCGGGgAG-AGgGCGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.