Results 41 - 60 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10885 | 5' | -65.3 | NC_002794.1 | + | 190666 | 0.69 | 0.371887 |
Target: 5'- uCGCGCCCGCcgcGCCgCCgggUCUCCaCGCa-- -3' miRNA: 3'- -GCGCGGGCGu--CGG-GG---AGAGG-GCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 62782 | 0.69 | 0.371887 |
Target: 5'- cCGCGCgCCGCcuccgGGCCCCuaccUCUCCgGCa-- -3' miRNA: 3'- -GCGCG-GGCG-----UCGGGG----AGAGGgCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 81187 | 0.69 | 0.371887 |
Target: 5'- aGCGgCUGUcucuuguacGGCCgCCUgCUCCCGCUCu -3' miRNA: 3'- gCGCgGGCG---------UCGG-GGA-GAGGGCGAGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 59052 | 0.69 | 0.379485 |
Target: 5'- cCGCGCCUGCGGCCugggccugcaCCUCaagacCCUGCUg- -3' miRNA: 3'- -GCGCGGGCGUCGG----------GGAGa----GGGCGAgu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 157006 | 0.69 | 0.394989 |
Target: 5'- gCGgGCCCGCGGCCagCCggCUUauUCGCUCGu -3' miRNA: 3'- -GCgCGGGCGUCGG--GGa-GAG--GGCGAGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 24026 | 0.69 | 0.379485 |
Target: 5'- gGCGCCUcggcgacgGCGGUCCCUC-CCCGUcCGc -3' miRNA: 3'- gCGCGGG--------CGUCGGGGAGaGGGCGaGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 118779 | 0.69 | 0.402893 |
Target: 5'- aCGCGCuCCGUcaGGCUCCgcagCgucgCCCGCUUg -3' miRNA: 3'- -GCGCG-GGCG--UCGGGGa---Ga---GGGCGAGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 126445 | 0.68 | 0.452345 |
Target: 5'- gGCGCCU-CGGCCCUgggUCCgGCUCGu -3' miRNA: 3'- gCGCGGGcGUCGGGGag-AGGgCGAGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 19340 | 0.68 | 0.435487 |
Target: 5'- gCGCGCCgGuCAcCCCCUCgccgCCCGCc-- -3' miRNA: 3'- -GCGCGGgC-GUcGGGGAGa---GGGCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 131392 | 0.68 | 0.443871 |
Target: 5'- cCGCGCCCGUcaucacGGCCUCg--CCCGUgaUCGg -3' miRNA: 3'- -GCGCGGGCG------UCGGGGagaGGGCG--AGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 55062 | 0.68 | 0.452345 |
Target: 5'- aGCGCgCCGUcGCCCCcggUC-CCCGC-CAg -3' miRNA: 3'- gCGCG-GGCGuCGGGG---AGaGGGCGaGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 85074 | 0.68 | 0.435487 |
Target: 5'- cCGCGUCUGC-GCCCCcggucUCUCaCCGCa-- -3' miRNA: 3'- -GCGCGGGCGuCGGGG-----AGAG-GGCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 58884 | 0.68 | 0.435487 |
Target: 5'- gCGCGCCgCGCAGCUCgaggCCCGCa-- -3' miRNA: 3'- -GCGCGG-GCGUCGGGgagaGGGCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 68918 | 0.68 | 0.418997 |
Target: 5'- gGgGCUCGCGGCgUCCUCgucgCCCGCg-- -3' miRNA: 3'- gCgCGGGCGUCG-GGGAGa---GGGCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 68841 | 0.68 | 0.418997 |
Target: 5'- gGCGCUCGCGGUCCC-CgacgaCCCcggaGCUCGg -3' miRNA: 3'- gCGCGGGCGUCGGGGaGa----GGG----CGAGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 113263 | 0.68 | 0.427195 |
Target: 5'- gCGCGUCCGCccgcucGGCCag-CUCCCGCg-- -3' miRNA: 3'- -GCGCGGGCG------UCGGggaGAGGGCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 182369 | 0.68 | 0.435487 |
Target: 5'- gGCGCa--CGGCCCCccggUCcCCCGCUCAg -3' miRNA: 3'- gCGCGggcGUCGGGG----AGaGGGCGAGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 15667 | 0.68 | 0.427195 |
Target: 5'- uCGCGCCaGCAGCCCCaaUUCgCGgUCGa -3' miRNA: 3'- -GCGCGGgCGUCGGGGagAGG-GCgAGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 82912 | 0.68 | 0.418997 |
Target: 5'- -cCGCCuCGCGGCCCCgccgCcgUCgCCGCUCc -3' miRNA: 3'- gcGCGG-GCGUCGGGGa---G--AG-GGCGAGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 13355 | 0.68 | 0.410896 |
Target: 5'- gGCGCCCcucGCccgGGCCCUcCUCCCcCUCGa -3' miRNA: 3'- gCGCGGG---CG---UCGGGGaGAGGGcGAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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