miRNA display CGI


Results 81 - 100 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 47341 0.67 0.478281
Target:  5'- cCGCGgCgGCGGCCuCCggacgUUCgCGCUCAa -3'
miRNA:   3'- -GCGCgGgCGUCGG-GGa----GAGgGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 118672 0.67 0.478281
Target:  5'- gCGaCGCCCGCGGCCgCCg--CCgGCggCAg -3'
miRNA:   3'- -GC-GCGGGCGUCGG-GGagaGGgCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 53967 0.67 0.487089
Target:  5'- gCGCGUCCGCuccguccggcuGCCCCgcgccagcgUCUCCagcaGCUCc -3'
miRNA:   3'- -GCGCGGGCGu----------CGGGG---------AGAGGg---CGAGu -5'
10885 5' -65.3 NC_002794.1 + 14920 0.67 0.487089
Target:  5'- gCGgGCUCGCGGUCCCgacgugCUCUCGaUCGg -3'
miRNA:   3'- -GCgCGGGCGUCGGGGa-----GAGGGCgAGU- -5'
10885 5' -65.3 NC_002794.1 + 119517 0.67 0.478281
Target:  5'- gGCGCggagccggCCGCGGaCCCCUCgUCCGCg-- -3'
miRNA:   3'- gCGCG--------GGCGUC-GGGGAGaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 36725 0.67 0.495973
Target:  5'- gGCGCUcgCGCAGCCCgUucacguagaaCUCCCGgUCc -3'
miRNA:   3'- gCGCGG--GCGUCGGGgA----------GAGGGCgAGu -5'
10885 5' -65.3 NC_002794.1 + 75384 0.67 0.495973
Target:  5'- gGCGgCgGCGGCCUCUC-CCCGUc-- -3'
miRNA:   3'- gCGCgGgCGUCGGGGAGaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 188015 0.67 0.487089
Target:  5'- aCGaCGCCCGUcucGGCgCCCUCgccgUCCCGgaCGc -3'
miRNA:   3'- -GC-GCGGGCG---UCG-GGGAG----AGGGCgaGU- -5'
10885 5' -65.3 NC_002794.1 + 141566 0.67 0.49419
Target:  5'- cCGCGgCCGCGGCCUC-CgugaucaugacgCCCGCgUCGc -3'
miRNA:   3'- -GCGCgGGCGUCGGGGaGa-----------GGGCG-AGU- -5'
10885 5' -65.3 NC_002794.1 + 82804 0.66 0.559975
Target:  5'- aCGCGCgCCGCGaCCCgCgg-CUCGCUCGa -3'
miRNA:   3'- -GCGCG-GGCGUcGGG-GagaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 193288 0.66 0.550666
Target:  5'- uGCGCCgGUAGUCgCCg--UCCGCUCc -3'
miRNA:   3'- gCGCGGgCGUCGG-GGagaGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 168 0.66 0.550666
Target:  5'- -aCGCCCGC-GCCCCcaaacacgCUCUCGCa-- -3'
miRNA:   3'- gcGCGGGCGuCGGGGa-------GAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 154832 0.66 0.541405
Target:  5'- gGCGUCCGCGGCUUC-CUCCaagugaGuCUCGu -3'
miRNA:   3'- gCGCGGGCGUCGGGGaGAGGg-----C-GAGU- -5'
10885 5' -65.3 NC_002794.1 + 193129 0.66 0.541405
Target:  5'- uCGuCGgCgGCAGCUCCUCgugCCCGUaCAg -3'
miRNA:   3'- -GC-GCgGgCGUCGGGGAGa--GGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 31386 0.66 0.541405
Target:  5'- cCGuCGUCgGCGGCCCCgccgCgCCCGC-CGc -3'
miRNA:   3'- -GC-GCGGgCGUCGGGGa---GaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 57440 0.66 0.532196
Target:  5'- gGCGCCCGUcauccAGCaCCUgCUccacgcgcugcgCCCGCUCGu -3'
miRNA:   3'- gCGCGGGCG-----UCG-GGGaGA------------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 190365 0.66 0.523045
Target:  5'- cCGCGCggCGCAGCgggugCUCCCGCUCc -3'
miRNA:   3'- -GCGCGg-GCGUCGggga-GAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 183021 0.66 0.523957
Target:  5'- gCGCGCCCGCcGCCCCggacgaagaagcacgCguaguagCCCaggucGCUCGc -3'
miRNA:   3'- -GCGCGGGCGuCGGGGa--------------Ga------GGG-----CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 30529 0.66 0.528528
Target:  5'- gGCaGCCCGCgcuccaAGaCCCUCggauggauccgcgCCCGCUCGu -3'
miRNA:   3'- gCG-CGGGCG------UCgGGGAGa------------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 189137 0.66 0.559975
Target:  5'- gCGgGgCCGCcagcGCCagaCUCUCCCGCggCAg -3'
miRNA:   3'- -GCgCgGGCGu---CGGg--GAGAGGGCGa-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.