Results 21 - 40 of 119 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10885 | 5' | -65.3 | NC_002794.1 | + | 194830 | 0.71 | 0.301743 |
Target: 5'- gCGCGCUCGCGGCCCggcgUCUCCaGCcgCAc -3' miRNA: 3'- -GCGCGGGCGUCGGGg---AGAGGgCGa-GU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 50727 | 0.71 | 0.301743 |
Target: 5'- uCGcCGCCCgggGCGGCCgCCUCgaCUCGCUCGu -3' miRNA: 3'- -GC-GCGGG---CGUCGG-GGAGa-GGGCGAGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 53422 | 0.71 | 0.308275 |
Target: 5'- aGCgGCCCGCucucGCUCgCcCUCCCGCUCu -3' miRNA: 3'- gCG-CGGGCGu---CGGG-GaGAGGGCGAGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 14507 | 0.7 | 0.314915 |
Target: 5'- cCGCGCUCGCGGCgCUCguggCgCCGCUCGg -3' miRNA: 3'- -GCGCGGGCGUCG-GGGaga-G-GGCGAGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 99608 | 0.7 | 0.314915 |
Target: 5'- gCGCGCUCGC-GCCgCCUCggcCCCGUUUc -3' miRNA: 3'- -GCGCGGGCGuCGG-GGAGa--GGGCGAGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 81954 | 0.7 | 0.321662 |
Target: 5'- uGCGCCauCGCGGCgCCCg--CCCGCUUc -3' miRNA: 3'- gCGCGG--GCGUCG-GGGagaGGGCGAGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 85010 | 0.7 | 0.321662 |
Target: 5'- cCGCGCUCgGguGCCCCgggC-CCaCGCUCGg -3' miRNA: 3'- -GCGCGGG-CguCGGGGa--GaGG-GCGAGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 32169 | 0.7 | 0.321662 |
Target: 5'- gGUgGCCCGCcuGGCCCCggUCCCGCa-- -3' miRNA: 3'- gCG-CGGGCG--UCGGGGagAGGGCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 190592 | 0.7 | 0.321662 |
Target: 5'- uCGCG-CCGCAGCUCCUCcaggUCCGCg-- -3' miRNA: 3'- -GCGCgGGCGUCGGGGAGa---GGGCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 18618 | 0.7 | 0.335478 |
Target: 5'- gGCaCCgGCcGCCCCUCcgacgCCCGCUCc -3' miRNA: 3'- gCGcGGgCGuCGGGGAGa----GGGCGAGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 65423 | 0.7 | 0.335478 |
Target: 5'- aCGCGCCUGCccacccuccgGGuUUCCUCUCCCgagcGCUCAc -3' miRNA: 3'- -GCGCGGGCG----------UC-GGGGAGAGGG----CGAGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 72370 | 0.7 | 0.349723 |
Target: 5'- gCGCGUCCGCGGCCCCgg--CCGUcgUCu -3' miRNA: 3'- -GCGCGGGCGUCGGGGagagGGCG--AGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 63368 | 0.7 | 0.349723 |
Target: 5'- cCGuCGCCCGCGccgcuGCCCCgccgC-CCCGCUg- -3' miRNA: 3'- -GC-GCGGGCGU-----CGGGGa---GaGGGCGAgu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 6936 | 0.69 | 0.364394 |
Target: 5'- aGcCGCCgCGCGGCaCCCUCUCggucucgggcUCGCUCc -3' miRNA: 3'- gC-GCGG-GCGUCG-GGGAGAG----------GGCGAGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 62782 | 0.69 | 0.371887 |
Target: 5'- cCGCGCgCCGCcuccgGGCCCCuaccUCUCCgGCa-- -3' miRNA: 3'- -GCGCG-GGCG-----UCGGGG----AGAGGgCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 81187 | 0.69 | 0.371887 |
Target: 5'- aGCGgCUGUcucuuguacGGCCgCCUgCUCCCGCUCu -3' miRNA: 3'- gCGCgGGCG---------UCGG-GGA-GAGGGCGAGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 190666 | 0.69 | 0.371887 |
Target: 5'- uCGCGCCCGCcgcGCCgCCgggUCUCCaCGCa-- -3' miRNA: 3'- -GCGCGGGCGu--CGG-GG---AGAGG-GCGagu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 71906 | 0.69 | 0.37872 |
Target: 5'- aGCuCCCGCAGCCCCUCgacggcgacgacuUCCaggucgcgcaGCUCc -3' miRNA: 3'- gCGcGGGCGUCGGGGAG-------------AGGg---------CGAGu -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 41384 | 0.69 | 0.379485 |
Target: 5'- gGCGCCUccuucgGCGGCCCCgauuUC-CCCGuCUCGc -3' miRNA: 3'- gCGCGGG------CGUCGGGG----AGaGGGC-GAGU- -5' |
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10885 | 5' | -65.3 | NC_002794.1 | + | 24026 | 0.69 | 0.379485 |
Target: 5'- gGCGCCUcggcgacgGCGGUCCCUC-CCCGUcCGc -3' miRNA: 3'- gCGCGGG--------CGUCGGGGAGaGGGCGaGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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