miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 31386 0.66 0.541405
Target:  5'- cCGuCGUCgGCGGCCCCgccgCgCCCGC-CGc -3'
miRNA:   3'- -GC-GCGGgCGUCGGGGa---GaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 193129 0.66 0.541405
Target:  5'- uCGuCGgCgGCAGCUCCUCgugCCCGUaCAg -3'
miRNA:   3'- -GC-GCgGgCGUCGGGGAGa--GGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 154832 0.66 0.541405
Target:  5'- gGCGUCCGCGGCUUC-CUCCaagugaGuCUCGu -3'
miRNA:   3'- gCGCGGGCGUCGGGGaGAGGg-----C-GAGU- -5'
10885 5' -65.3 NC_002794.1 + 75412 0.66 0.541405
Target:  5'- -uCGUCCGCcGUCuCCUCagCCCGCUCc -3'
miRNA:   3'- gcGCGGGCGuCGG-GGAGa-GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 189894 0.66 0.541405
Target:  5'- uCGgGCCCGCcgucagcGCCgCCgcgCgaccgCCCGCUCGc -3'
miRNA:   3'- -GCgCGGGCGu------CGG-GGa--Ga----GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 41911 0.66 0.541405
Target:  5'- gCGCGCCaCG-AGCCCCUCgugggccagCCCGaagugCAc -3'
miRNA:   3'- -GCGCGG-GCgUCGGGGAGa--------GGGCga---GU- -5'
10885 5' -65.3 NC_002794.1 + 57440 0.66 0.532196
Target:  5'- gGCGCCCGUcauccAGCaCCUgCUccacgcgcugcgCCCGCUCGu -3'
miRNA:   3'- gCGCGGGCG-----UCG-GGGaGA------------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 30529 0.66 0.528528
Target:  5'- gGCaGCCCGCgcuccaAGaCCCUCggauggauccgcgCCCGCUCGu -3'
miRNA:   3'- gCG-CGGGCG------UCgGGGAGa------------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 183021 0.66 0.523957
Target:  5'- gCGCGCCCGCcGCCCCggacgaagaagcacgCguaguagCCCaggucGCUCGc -3'
miRNA:   3'- -GCGCGGGCGuCGGGGa--------------Ga------GGG-----CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 190365 0.66 0.523045
Target:  5'- cCGCGCggCGCAGCgggugCUCCCGCUCc -3'
miRNA:   3'- -GCGCGg-GCGUCGggga-GAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 191520 0.67 0.513954
Target:  5'- aGCGCCgggCGuCGGCCCgCgcCUCCCGCcgCAg -3'
miRNA:   3'- gCGCGG---GC-GUCGGG-Ga-GAGGGCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 64284 0.67 0.513954
Target:  5'- gGCGCucuacgcccaCCGCGGCCCCg-UCgUGCUCc -3'
miRNA:   3'- gCGCG----------GGCGUCGGGGagAGgGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 111756 0.67 0.513954
Target:  5'- gGCGCCgCGCGGCgCCgUCggggcgggCUCGUUCGu -3'
miRNA:   3'- gCGCGG-GCGUCG-GGgAGa-------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 187042 0.67 0.513954
Target:  5'- cCG-GCUCGCAGUCCCggagCCCGCg-- -3'
miRNA:   3'- -GCgCGGGCGUCGGGGaga-GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 194471 0.67 0.513954
Target:  5'- cCGCGCuCCaGCGGCUCCUCcagccgCCC-CUCc -3'
miRNA:   3'- -GCGCG-GG-CGUCGGGGAGa-----GGGcGAGu -5'
10885 5' -65.3 NC_002794.1 + 137092 0.67 0.504929
Target:  5'- uGuCGCCCGCucgcGCUCCUuccgcgacCUCCCGCcCGa -3'
miRNA:   3'- gC-GCGGGCGu---CGGGGA--------GAGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 145773 0.67 0.504929
Target:  5'- aGCGCCaCGCGGagucguCCCCgg-CCgGCUCGg -3'
miRNA:   3'- gCGCGG-GCGUC------GGGGagaGGgCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 61127 0.67 0.504929
Target:  5'- uCGUGCuCUGCGcGCCCCUgCUgCCGCcCGa -3'
miRNA:   3'- -GCGCG-GGCGU-CGGGGA-GAgGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 151604 0.67 0.504929
Target:  5'- gCGgGCCCGCGGUUCCUCggcugacggCCgGCa-- -3'
miRNA:   3'- -GCgCGGGCGUCGGGGAGa--------GGgCGagu -5'
10885 5' -65.3 NC_002794.1 + 187517 0.67 0.504929
Target:  5'- gGCGCCCGCGGaggaaCUC-CCCGC-CGc -3'
miRNA:   3'- gCGCGGGCGUCggg--GAGaGGGCGaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.