miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 151604 0.67 0.504929
Target:  5'- gCGgGCCCGCGGUUCCUCggcugacggCCgGCa-- -3'
miRNA:   3'- -GCgCGGGCGUCGGGGAGa--------GGgCGagu -5'
10885 5' -65.3 NC_002794.1 + 61127 0.67 0.504929
Target:  5'- uCGUGCuCUGCGcGCCCCUgCUgCCGCcCGa -3'
miRNA:   3'- -GCGCG-GGCGU-CGGGGA-GAgGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 145773 0.67 0.504929
Target:  5'- aGCGCCaCGCGGagucguCCCCgg-CCgGCUCGg -3'
miRNA:   3'- gCGCGG-GCGUC------GGGGagaGGgCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 90723 0.67 0.504929
Target:  5'- aCGUGCUCGCGGCCCUgucgCUgugcgaCCGgUCGu -3'
miRNA:   3'- -GCGCGGGCGUCGGGGa---GAg-----GGCgAGU- -5'
10885 5' -65.3 NC_002794.1 + 75384 0.67 0.495973
Target:  5'- gGCGgCgGCGGCCUCUC-CCCGUc-- -3'
miRNA:   3'- gCGCgGgCGUCGGGGAGaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 36725 0.67 0.495973
Target:  5'- gGCGCUcgCGCAGCCCgUucacguagaaCUCCCGgUCc -3'
miRNA:   3'- gCGCGG--GCGUCGGGgA----------GAGGGCgAGu -5'
10885 5' -65.3 NC_002794.1 + 95242 0.67 0.495973
Target:  5'- --gGUUCGCGGCCCCguuugUCgagCCUGCUCGa -3'
miRNA:   3'- gcgCGGGCGUCGGGG-----AGa--GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 141566 0.67 0.49419
Target:  5'- cCGCGgCCGCGGCCUC-CgugaucaugacgCCCGCgUCGc -3'
miRNA:   3'- -GCGCgGGCGUCGGGGaGa-----------GGGCG-AGU- -5'
10885 5' -65.3 NC_002794.1 + 53967 0.67 0.487089
Target:  5'- gCGCGUCCGCuccguccggcuGCCCCgcgccagcgUCUCCagcaGCUCc -3'
miRNA:   3'- -GCGCGGGCGu----------CGGGG---------AGAGGg---CGAGu -5'
10885 5' -65.3 NC_002794.1 + 14920 0.67 0.487089
Target:  5'- gCGgGCUCGCGGUCCCgacgugCUCUCGaUCGg -3'
miRNA:   3'- -GCgCGGGCGUCGGGGa-----GAGGGCgAGU- -5'
10885 5' -65.3 NC_002794.1 + 188015 0.67 0.487089
Target:  5'- aCGaCGCCCGUcucGGCgCCCUCgccgUCCCGgaCGc -3'
miRNA:   3'- -GC-GCGGGCG---UCG-GGGAG----AGGGCgaGU- -5'
10885 5' -65.3 NC_002794.1 + 119517 0.67 0.478281
Target:  5'- gGCGCggagccggCCGCGGaCCCCUCgUCCGCg-- -3'
miRNA:   3'- gCGCG--------GGCGUC-GGGGAGaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 118672 0.67 0.478281
Target:  5'- gCGaCGCCCGCGGCCgCCg--CCgGCggCAg -3'
miRNA:   3'- -GC-GCGGGCGUCGG-GGagaGGgCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 47341 0.67 0.478281
Target:  5'- cCGCGgCgGCGGCCuCCggacgUUCgCGCUCAa -3'
miRNA:   3'- -GCGCgGgCGUCGG-GGa----GAGgGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 63219 0.67 0.469553
Target:  5'- gCGCGaCCUGCcGCCCCUgcgcCUCCgCGC-CGa -3'
miRNA:   3'- -GCGC-GGGCGuCGGGGA----GAGG-GCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 144075 0.67 0.460906
Target:  5'- aCGCGUCCGacgagguGGCCUggCUgUCCCGCUUg -3'
miRNA:   3'- -GCGCGGGCg------UCGGG--GAgAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 55062 0.68 0.452345
Target:  5'- aGCGCgCCGUcGCCCCcggUC-CCCGC-CAg -3'
miRNA:   3'- gCGCG-GGCGuCGGGG---AGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 126445 0.68 0.452345
Target:  5'- gGCGCCU-CGGCCCUgggUCCgGCUCGu -3'
miRNA:   3'- gCGCGGGcGUCGGGGag-AGGgCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 131392 0.68 0.443871
Target:  5'- cCGCGCCCGUcaucacGGCCUCg--CCCGUgaUCGg -3'
miRNA:   3'- -GCGCGGGCG------UCGGGGagaGGGCG--AGU- -5'
10885 5' -65.3 NC_002794.1 + 115092 0.68 0.443871
Target:  5'- gGcCGCCCGCAGCCgCgcgUCCGCgUCGu -3'
miRNA:   3'- gC-GCGGGCGUCGGgGagaGGGCG-AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.