miRNA display CGI


Results 21 - 40 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 41911 0.66 0.541405
Target:  5'- gCGCGCCaCG-AGCCCCUCgugggccagCCCGaagugCAc -3'
miRNA:   3'- -GCGCGG-GCgUCGGGGAGa--------GGGCga---GU- -5'
10885 5' -65.3 NC_002794.1 + 46500 0.66 0.578717
Target:  5'- uCGgGCUCGCGcacGCCUgUaauagugugugcCUCCCGCUCGu -3'
miRNA:   3'- -GCgCGGGCGU---CGGGgA------------GAGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 47341 0.67 0.478281
Target:  5'- cCGCGgCgGCGGCCuCCggacgUUCgCGCUCAa -3'
miRNA:   3'- -GCGCgGgCGUCGG-GGa----GAGgGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 49617 0.74 0.197365
Target:  5'- gGCGCCgGCGGCgCCUCgCCCGCc-- -3'
miRNA:   3'- gCGCGGgCGUCGgGGAGaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 49887 0.76 0.135344
Target:  5'- aGCGCCCGCAGCCCCgaaacacggCguagggcaacgUCCGCUCc -3'
miRNA:   3'- gCGCGGGCGUCGGGGa--------Ga----------GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 50727 0.71 0.301743
Target:  5'- uCGcCGCCCgggGCGGCCgCCUCgaCUCGCUCGu -3'
miRNA:   3'- -GC-GCGGG---CGUCGG-GGAGa-GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 53422 0.71 0.308275
Target:  5'- aGCgGCCCGCucucGCUCgCcCUCCCGCUCu -3'
miRNA:   3'- gCG-CGGGCGu---CGGG-GaGAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 53967 0.67 0.487089
Target:  5'- gCGCGUCCGCuccguccggcuGCCCCgcgccagcgUCUCCagcaGCUCc -3'
miRNA:   3'- -GCGCGGGCGu----------CGGGG---------AGAGGg---CGAGu -5'
10885 5' -65.3 NC_002794.1 + 55062 0.68 0.452345
Target:  5'- aGCGCgCCGUcGCCCCcggUC-CCCGC-CAg -3'
miRNA:   3'- gCGCG-GGCGuCGGGG---AGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 55522 0.74 0.192853
Target:  5'- aCGCcaGCCCgGCGGCCCCgucgccCUCCCGUUUg -3'
miRNA:   3'- -GCG--CGGG-CGUCGGGGa-----GAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 57440 0.66 0.532196
Target:  5'- gGCGCCCGUcauccAGCaCCUgCUccacgcgcugcgCCCGCUCGu -3'
miRNA:   3'- gCGCGGGCG-----UCG-GGGaGA------------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 57502 0.69 0.394989
Target:  5'- gCGCGCCCGCcGCCUacggcgagUUCgUGCUCAg -3'
miRNA:   3'- -GCGCGGGCGuCGGGga------GAGgGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 57948 0.66 0.550666
Target:  5'- aCGCGCUgCGCAGCCUgUgccaCCCGCUg- -3'
miRNA:   3'- -GCGCGG-GCGUCGGGgAga--GGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 58884 0.68 0.435487
Target:  5'- gCGCGCCgCGCAGCUCgaggCCCGCa-- -3'
miRNA:   3'- -GCGCGG-GCGUCGGGgagaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 59052 0.69 0.379485
Target:  5'- cCGCGCCUGCGGCCugggccugcaCCUCaagacCCUGCUg- -3'
miRNA:   3'- -GCGCGGGCGUCGG----------GGAGa----GGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 59272 0.69 0.402893
Target:  5'- gCGCGCCUGCuGGagaUCCgCUCgCCGCUCGa -3'
miRNA:   3'- -GCGCGGGCG-UCg--GGGaGAG-GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 59590 0.69 0.394204
Target:  5'- gCGCacuGCCCGCAGCagCUCUCCUccgugcuggcgcuGCUCGc -3'
miRNA:   3'- -GCG---CGGGCGUCGggGAGAGGG-------------CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 59922 0.75 0.148924
Target:  5'- gGCGCCCGCGuGCaggaCCUCUUCCGCg-- -3'
miRNA:   3'- gCGCGGGCGU-CGg---GGAGAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 60889 0.66 0.550666
Target:  5'- gGCG-CCGUGGUCCCcaUCCCGUUCc -3'
miRNA:   3'- gCGCgGGCGUCGGGGagAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 61127 0.67 0.504929
Target:  5'- uCGUGCuCUGCGcGCCCCUgCUgCCGCcCGa -3'
miRNA:   3'- -GCGCG-GGCGU-CGGGGA-GAgGGCGaGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.