miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 62302 0.66 0.573079
Target:  5'- cCGaGCCCGCGcgcagacggaaaaccGCCCCUCgcuggcggagCCCGCg-- -3'
miRNA:   3'- -GCgCGGGCGU---------------CGGGGAGa---------GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 62741 0.73 0.20197
Target:  5'- cCGcCGCCCGCGGCCgUCUCgcUCCgGCUCc -3'
miRNA:   3'- -GC-GCGGGCGUCGG-GGAG--AGGgCGAGu -5'
10885 5' -65.3 NC_002794.1 + 62782 0.69 0.371887
Target:  5'- cCGCGCgCCGCcuccgGGCCCCuaccUCUCCgGCa-- -3'
miRNA:   3'- -GCGCG-GGCG-----UCGGGG----AGAGGgCGagu -5'
10885 5' -65.3 NC_002794.1 + 63219 0.67 0.469553
Target:  5'- gCGCGaCCUGCcGCCCCUgcgcCUCCgCGC-CGa -3'
miRNA:   3'- -GCGC-GGGCGuCGGGGA----GAGG-GCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 63368 0.7 0.349723
Target:  5'- cCGuCGCCCGCGccgcuGCCCCgccgC-CCCGCUg- -3'
miRNA:   3'- -GC-GCGGGCGU-----CGGGGa---GaGGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 64284 0.67 0.513954
Target:  5'- gGCGCucuacgcccaCCGCGGCCCCg-UCgUGCUCc -3'
miRNA:   3'- gCGCG----------GGCGUCGGGGagAGgGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 65423 0.7 0.335478
Target:  5'- aCGCGCCUGCccacccuccgGGuUUCCUCUCCCgagcGCUCAc -3'
miRNA:   3'- -GCGCGGGCG----------UC-GGGGAGAGGG----CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 68109 0.66 0.578717
Target:  5'- cCGUGUugaaCCGCGGCCUCgagaUCCUGCUg- -3'
miRNA:   3'- -GCGCG----GGCGUCGGGGag--AGGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 68657 0.72 0.258999
Target:  5'- aCGUuauCCCGCAGCCCUcC-CCCGCUCc -3'
miRNA:   3'- -GCGc--GGGCGUCGGGGaGaGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 68841 0.68 0.418997
Target:  5'- gGCGCUCGCGGUCCC-CgacgaCCCcggaGCUCGg -3'
miRNA:   3'- gCGCGGGCGUCGGGGaGa----GGG----CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 68918 0.68 0.418997
Target:  5'- gGgGCUCGCGGCgUCCUCgucgCCCGCg-- -3'
miRNA:   3'- gCgCGGGCGUCG-GGGAGa---GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 69032 0.67 0.504929
Target:  5'- gGCGCCCucgcCGGCuUCCUCgCuCCGCUCGc -3'
miRNA:   3'- gCGCGGGc---GUCG-GGGAGaG-GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 70351 0.72 0.242249
Target:  5'- gGCGCCCGCucguccGCCCa---CCCGCUCGc -3'
miRNA:   3'- gCGCGGGCGu-----CGGGgagaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 71906 0.69 0.37872
Target:  5'- aGCuCCCGCAGCCCCUCgacggcgacgacuUCCaggucgcgcaGCUCc -3'
miRNA:   3'- gCGcGGGCGUCGGGGAG-------------AGGg---------CGAGu -5'
10885 5' -65.3 NC_002794.1 + 72370 0.7 0.349723
Target:  5'- gCGCGUCCGCGGCCCCgg--CCGUcgUCu -3'
miRNA:   3'- -GCGCGGGCGUCGGGGagagGGCG--AGu -5'
10885 5' -65.3 NC_002794.1 + 72721 0.75 0.15617
Target:  5'- cCGUGCCCaugaCGGCCCCgcgCUCCCGCg-- -3'
miRNA:   3'- -GCGCGGGc---GUCGGGGa--GAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 75384 0.67 0.495973
Target:  5'- gGCGgCgGCGGCCUCUC-CCCGUc-- -3'
miRNA:   3'- gCGCgGgCGUCGGGGAGaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 75412 0.66 0.541405
Target:  5'- -uCGUCCGCcGUCuCCUCagCCCGCUCc -3'
miRNA:   3'- gcGCGGGCGuCGG-GGAGa-GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 80462 0.76 0.132132
Target:  5'- gGCgGCCCGCuGCCCgUCUUCCGCgUCGa -3'
miRNA:   3'- gCG-CGGGCGuCGGGgAGAGGGCG-AGU- -5'
10885 5' -65.3 NC_002794.1 + 80884 0.68 0.427195
Target:  5'- gCGUGCCCcgaucccccgGCGG-CCCUCgacgacccgcgCCCGCUCGa -3'
miRNA:   3'- -GCGCGGG----------CGUCgGGGAGa----------GGGCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.