miRNA display CGI


Results 61 - 80 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 81187 0.69 0.371887
Target:  5'- aGCGgCUGUcucuuguacGGCCgCCUgCUCCCGCUCu -3'
miRNA:   3'- gCGCgGGCG---------UCGG-GGA-GAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 81954 0.7 0.321662
Target:  5'- uGCGCCauCGCGGCgCCCg--CCCGCUUc -3'
miRNA:   3'- gCGCGG--GCGUCG-GGGagaGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 82804 0.66 0.559975
Target:  5'- aCGCGCgCCGCGaCCCgCgg-CUCGCUCGa -3'
miRNA:   3'- -GCGCG-GGCGUcGGG-GagaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 82912 0.68 0.418997
Target:  5'- -cCGCCuCGCGGCCCCgccgCcgUCgCCGCUCc -3'
miRNA:   3'- gcGCGG-GCGUCGGGGa---G--AG-GGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 83008 0.66 0.559975
Target:  5'- aCGCGCCCGaucugcGCCCCg-UCCCGg--- -3'
miRNA:   3'- -GCGCGGGCgu----CGGGGagAGGGCgagu -5'
10885 5' -65.3 NC_002794.1 + 83230 0.66 0.559975
Target:  5'- uCGCGCUCGCGGacgagaCgCUCUCCUacCUCAa -3'
miRNA:   3'- -GCGCGGGCGUCg-----GgGAGAGGGc-GAGU- -5'
10885 5' -65.3 NC_002794.1 + 83899 0.66 0.559975
Target:  5'- gGCGCCCGacgagccCGGCaCCCUCgccgacagacgagaCCGCUUAg -3'
miRNA:   3'- gCGCGGGC-------GUCG-GGGAGag------------GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 85010 0.7 0.321662
Target:  5'- cCGCGCUCgGguGCCCCgggC-CCaCGCUCGg -3'
miRNA:   3'- -GCGCGGG-CguCGGGGa--GaGG-GCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 85074 0.68 0.435487
Target:  5'- cCGCGUCUGC-GCCCCcggucUCUCaCCGCa-- -3'
miRNA:   3'- -GCGCGGGCGuCGGGG-----AGAG-GGCGagu -5'
10885 5' -65.3 NC_002794.1 + 90203 0.66 0.569327
Target:  5'- gGUGCCCGC-GCCuCCg--CCCGC-CGc -3'
miRNA:   3'- gCGCGGGCGuCGG-GGagaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 90723 0.67 0.504929
Target:  5'- aCGUGCUCGCGGCCCUgucgCUgugcgaCCGgUCGu -3'
miRNA:   3'- -GCGCGGGCGUCGGGGa---GAg-----GGCgAGU- -5'
10885 5' -65.3 NC_002794.1 + 93078 0.67 0.504929
Target:  5'- aGCGCCUGUucccgGGCUgcggCCUCUCCUGCc-- -3'
miRNA:   3'- gCGCGGGCG-----UCGG----GGAGAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 95242 0.67 0.495973
Target:  5'- --gGUUCGCGGCCCCguuugUCgagCCUGCUCGa -3'
miRNA:   3'- gcgCGGGCGUCGGGG-----AGa--GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 99608 0.7 0.314915
Target:  5'- gCGCGCUCGC-GCCgCCUCggcCCCGUUUc -3'
miRNA:   3'- -GCGCGGGCGuCGG-GGAGa--GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 100563 0.66 0.550666
Target:  5'- cCGUGgCCgaGCGGCaCCUCUUCaCGCUCGg -3'
miRNA:   3'- -GCGCgGG--CGUCGgGGAGAGG-GCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 103023 0.72 0.24773
Target:  5'- -cCGCCCGcCAGCCCCgcucUCUCCCcCUCc -3'
miRNA:   3'- gcGCGGGC-GUCGGGG----AGAGGGcGAGu -5'
10885 5' -65.3 NC_002794.1 + 105440 0.72 0.23687
Target:  5'- cCGCGCCgGCGGCgCCgUCguucugCCCGUUCu -3'
miRNA:   3'- -GCGCGGgCGUCG-GGgAGa-----GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 111128 0.66 0.578717
Target:  5'- gGCGCCgGCGGCCggugCUCCaCGCg-- -3'
miRNA:   3'- gCGCGGgCGUCGGgga-GAGG-GCGagu -5'
10885 5' -65.3 NC_002794.1 + 111756 0.67 0.513954
Target:  5'- gGCGCCgCGCGGCgCCgUCggggcgggCUCGUUCGu -3'
miRNA:   3'- gCGCGG-GCGUCG-GGgAGa-------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 113233 0.69 0.394989
Target:  5'- gGCGaCCGCcGUCCaggaUCUCCCGCUgCAg -3'
miRNA:   3'- gCGCgGGCGuCGGGg---AGAGGGCGA-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.