miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 194830 0.71 0.301743
Target:  5'- gCGCGCUCGCGGCCCggcgUCUCCaGCcgCAc -3'
miRNA:   3'- -GCGCGGGCGUCGGGg---AGAGGgCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 194471 0.67 0.513954
Target:  5'- cCGCGCuCCaGCGGCUCCUCcagccgCCC-CUCc -3'
miRNA:   3'- -GCGCG-GG-CGUCGGGGAGa-----GGGcGAGu -5'
10885 5' -65.3 NC_002794.1 + 194153 0.71 0.270089
Target:  5'- aGCGCCCGCgAGCCCUgccggcgcgccuUCUCCguccgcaCGUUCAc -3'
miRNA:   3'- gCGCGGGCG-UCGGGG------------AGAGG-------GCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 193758 0.72 0.23687
Target:  5'- aGCGaCCGcCGGCCCCgcUCgcucgCCCGCUCGa -3'
miRNA:   3'- gCGCgGGC-GUCGGGG--AGa----GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 193288 0.66 0.550666
Target:  5'- uGCGCCgGUAGUCgCCg--UCCGCUCc -3'
miRNA:   3'- gCGCGGgCGUCGG-GGagaGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 193129 0.66 0.541405
Target:  5'- uCGuCGgCgGCAGCUCCUCgugCCCGUaCAg -3'
miRNA:   3'- -GC-GCgGgCGUCGGGGAGa--GGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 191805 0.66 0.558109
Target:  5'- -cCGCCCGCucGGCCgCUCgaggaccgcgagCUCGCUCGa -3'
miRNA:   3'- gcGCGGGCG--UCGGgGAGa-----------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 191520 0.67 0.513954
Target:  5'- aGCGCCgggCGuCGGCCCgCgcCUCCCGCcgCAg -3'
miRNA:   3'- gCGCGG---GC-GUCGGG-Ga-GAGGGCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 191186 0.73 0.226411
Target:  5'- uCGCGCUCGCccGGCCgCC-CgCCCGCUCGc -3'
miRNA:   3'- -GCGCGGGCG--UCGG-GGaGaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 190666 0.69 0.371887
Target:  5'- uCGCGCCCGCcgcGCCgCCgggUCUCCaCGCa-- -3'
miRNA:   3'- -GCGCGGGCGu--CGG-GG---AGAGG-GCGagu -5'
10885 5' -65.3 NC_002794.1 + 190592 0.7 0.321662
Target:  5'- uCGCG-CCGCAGCUCCUCcaggUCCGCg-- -3'
miRNA:   3'- -GCGCgGGCGUCGGGGAGa---GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 190365 0.66 0.523045
Target:  5'- cCGCGCggCGCAGCgggugCUCCCGCUCc -3'
miRNA:   3'- -GCGCGg-GCGUCGggga-GAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 189894 0.66 0.541405
Target:  5'- uCGgGCCCGCcgucagcGCCgCCgcgCgaccgCCCGCUCGc -3'
miRNA:   3'- -GCgCGGGCGu------CGG-GGa--Ga----GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 189137 0.66 0.559975
Target:  5'- gCGgGgCCGCcagcGCCagaCUCUCCCGCggCAg -3'
miRNA:   3'- -GCgCgGGCGu---CGGg--GAGAGGGCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 188015 0.67 0.487089
Target:  5'- aCGaCGCCCGUcucGGCgCCCUCgccgUCCCGgaCGc -3'
miRNA:   3'- -GC-GCGGGCG---UCG-GGGAG----AGGGCgaGU- -5'
10885 5' -65.3 NC_002794.1 + 187517 0.67 0.504929
Target:  5'- gGCGCCCGCGGaggaaCUC-CCCGC-CGc -3'
miRNA:   3'- gCGCGGGCGUCggg--GAGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 187042 0.67 0.513954
Target:  5'- cCG-GCUCGCAGUCCCggagCCCGCg-- -3'
miRNA:   3'- -GCgCGGGCGUCGGGGaga-GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 186490 0.66 0.578717
Target:  5'- aGgGCCCgGCGGCgCgCCUC-CCCGC-CGu -3'
miRNA:   3'- gCgCGGG-CGUCG-G-GGAGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 184190 0.71 0.282788
Target:  5'- gGCGCCCGgcgaGGCCCg-CUCCCGCc-- -3'
miRNA:   3'- gCGCGGGCg---UCGGGgaGAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 183463 0.68 0.438829
Target:  5'- gGCGCCCGCccgccgcgaguccgcGGCCCgaUC-CCCGCg-- -3'
miRNA:   3'- gCGCGGGCG---------------UCGGGg-AGaGGGCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.