miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 183021 0.66 0.523957
Target:  5'- gCGCGCCCGCcGCCCCggacgaagaagcacgCguaguagCCCaggucGCUCGc -3'
miRNA:   3'- -GCGCGGGCGuCGGGGa--------------Ga------GGG-----CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 182369 0.68 0.435487
Target:  5'- gGCGCa--CGGCCCCccggUCcCCCGCUCAg -3'
miRNA:   3'- gCGCGggcGUCGGGG----AGaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 157006 0.69 0.394989
Target:  5'- gCGgGCCCGCGGCCagCCggCUUauUCGCUCGu -3'
miRNA:   3'- -GCgCGGGCGUCGG--GGa-GAG--GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 154832 0.66 0.541405
Target:  5'- gGCGUCCGCGGCUUC-CUCCaagugaGuCUCGu -3'
miRNA:   3'- gCGCGGGCGUCGGGGaGAGGg-----C-GAGU- -5'
10885 5' -65.3 NC_002794.1 + 151604 0.67 0.504929
Target:  5'- gCGgGCCCGCGGUUCCUCggcugacggCCgGCa-- -3'
miRNA:   3'- -GCgCGGGCGUCGGGGAGa--------GGgCGagu -5'
10885 5' -65.3 NC_002794.1 + 145773 0.67 0.504929
Target:  5'- aGCGCCaCGCGGagucguCCCCgg-CCgGCUCGg -3'
miRNA:   3'- gCGCGG-GCGUC------GGGGagaGGgCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 144075 0.67 0.460906
Target:  5'- aCGCGUCCGacgagguGGCCUggCUgUCCCGCUUg -3'
miRNA:   3'- -GCGCGGGCg------UCGGG--GAgAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 141566 0.67 0.49419
Target:  5'- cCGCGgCCGCGGCCUC-CgugaucaugacgCCCGCgUCGc -3'
miRNA:   3'- -GCGCgGGCGUCGGGGaGa-----------GGGCG-AGU- -5'
10885 5' -65.3 NC_002794.1 + 137092 0.67 0.504929
Target:  5'- uGuCGCCCGCucgcGCUCCUuccgcgacCUCCCGCcCGa -3'
miRNA:   3'- gC-GCGGGCGu---CGGGGA--------GAGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 136321 0.73 0.200579
Target:  5'- aGCGCCCGCAGCUCUUCUCgguggcgggCCagcguggcguugagGCUCAg -3'
miRNA:   3'- gCGCGGGCGUCGGGGAGAG---------GG--------------CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 131392 0.68 0.443871
Target:  5'- cCGCGCCCGUcaucacGGCCUCg--CCCGUgaUCGg -3'
miRNA:   3'- -GCGCGGGCG------UCGGGGagaGGGCG--AGU- -5'
10885 5' -65.3 NC_002794.1 + 126445 0.68 0.452345
Target:  5'- gGCGCCU-CGGCCCUgggUCCgGCUCGu -3'
miRNA:   3'- gCGCGGGcGUCGGGGag-AGGgCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 124417 0.76 0.135344
Target:  5'- gGCGCcguccgCCGCGGUCUCUCUCCCGCg-- -3'
miRNA:   3'- gCGCG------GGCGUCGGGGAGAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 119517 0.67 0.478281
Target:  5'- gGCGCggagccggCCGCGGaCCCCUCgUCCGCg-- -3'
miRNA:   3'- gCGCG--------GGCGUC-GGGGAGaGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 118779 0.69 0.402893
Target:  5'- aCGCGCuCCGUcaGGCUCCgcagCgucgCCCGCUUg -3'
miRNA:   3'- -GCGCG-GGCG--UCGGGGa---Ga---GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 118672 0.67 0.478281
Target:  5'- gCGaCGCCCGCGGCCgCCg--CCgGCggCAg -3'
miRNA:   3'- -GC-GCGGGCGUCGG-GGagaGGgCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 115092 0.68 0.443871
Target:  5'- gGcCGCCCGCAGCCgCgcgUCCGCgUCGu -3'
miRNA:   3'- gC-GCGGGCGUCGGgGagaGGGCG-AGU- -5'
10885 5' -65.3 NC_002794.1 + 113956 0.67 0.504929
Target:  5'- gGCuuCCUGCAGCCa--CUCCUGCUCGc -3'
miRNA:   3'- gCGc-GGGCGUCGGggaGAGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 113263 0.68 0.427195
Target:  5'- gCGCGUCCGCccgcucGGCCag-CUCCCGCg-- -3'
miRNA:   3'- -GCGCGGGCG------UCGGggaGAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 113233 0.69 0.394989
Target:  5'- gGCGaCCGCcGUCCaggaUCUCCCGCUgCAg -3'
miRNA:   3'- gCGCgGGCGuCGGGg---AGAGGGCGA-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.