miRNA display CGI


Results 101 - 119 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 41254 0.71 0.295318
Target:  5'- cCGaCGCCgGCGGCCCgUCgUCgCGCUCc -3'
miRNA:   3'- -GC-GCGGgCGUCGGGgAG-AGgGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 40572 0.66 0.578717
Target:  5'- uCGCGCCguccuggcCGCGGgCCCUCUCCUcCg-- -3'
miRNA:   3'- -GCGCGG--------GCGUCgGGGAGAGGGcGagu -5'
10885 5' -65.3 NC_002794.1 + 36725 0.67 0.495973
Target:  5'- gGCGCUcgCGCAGCCCgUucacguagaaCUCCCGgUCc -3'
miRNA:   3'- gCGCGG--GCGUCGGGgA----------GAGGGCgAGu -5'
10885 5' -65.3 NC_002794.1 + 35448 0.66 0.550666
Target:  5'- aGCuGCCUGCGGCUgaucgccagcugCCUCUaCCUGUUCu -3'
miRNA:   3'- gCG-CGGGCGUCGG------------GGAGA-GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 32169 0.7 0.321662
Target:  5'- gGUgGCCCGCcuGGCCCCggUCCCGCa-- -3'
miRNA:   3'- gCG-CGGGCG--UCGGGGagAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 31386 0.66 0.541405
Target:  5'- cCGuCGUCgGCGGCCCCgccgCgCCCGC-CGc -3'
miRNA:   3'- -GC-GCGGgCGUCGGGGa---GaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 31340 0.71 0.289
Target:  5'- gGCGCCCGCcguGUCCgccgCCCGCUCGu -3'
miRNA:   3'- gCGCGGGCGu--CGGGgagaGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 30529 0.66 0.528528
Target:  5'- gGCaGCCCGCgcuccaAGaCCCUCggauggauccgcgCCCGCUCGu -3'
miRNA:   3'- gCG-CGGGCG------UCgGGGAGa------------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 29755 0.66 0.559975
Target:  5'- gCGCcgaGCCCGCgccgAGCgUCUCggCCGCUCGa -3'
miRNA:   3'- -GCG---CGGGCG----UCGgGGAGagGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 24026 0.69 0.379485
Target:  5'- gGCGCCUcggcgacgGCGGUCCCUC-CCCGUcCGc -3'
miRNA:   3'- gCGCGGG--------CGUCGGGGAGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 22347 1.07 0.000729
Target:  5'- aCGCGCCCGCAGCCCCUCUCCCGCUCAc -3'
miRNA:   3'- -GCGCGGGCGUCGGGGAGAGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 19340 0.68 0.435487
Target:  5'- gCGCGCCgGuCAcCCCCUCgccgCCCGCc-- -3'
miRNA:   3'- -GCGCGGgC-GUcGGGGAGa---GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 18618 0.7 0.335478
Target:  5'- gGCaCCgGCcGCCCCUCcgacgCCCGCUCc -3'
miRNA:   3'- gCGcGGgCGuCGGGGAGa----GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 15667 0.68 0.427195
Target:  5'- uCGCGCCaGCAGCCCCaaUUCgCGgUCGa -3'
miRNA:   3'- -GCGCGGgCGUCGGGGagAGG-GCgAGU- -5'
10885 5' -65.3 NC_002794.1 + 14920 0.67 0.487089
Target:  5'- gCGgGCUCGCGGUCCCgacgugCUCUCGaUCGg -3'
miRNA:   3'- -GCgCGGGCGUCGGGGa-----GAGGGCgAGU- -5'
10885 5' -65.3 NC_002794.1 + 14507 0.7 0.314915
Target:  5'- cCGCGCUCGCGGCgCUCguggCgCCGCUCGg -3'
miRNA:   3'- -GCGCGGGCGUCG-GGGaga-G-GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 13355 0.68 0.410896
Target:  5'- gGCGCCCcucGCccgGGCCCUcCUCCCcCUCGa -3'
miRNA:   3'- gCGCGGG---CG---UCGGGGaGAGGGcGAGU- -5'
10885 5' -65.3 NC_002794.1 + 6936 0.69 0.364394
Target:  5'- aGcCGCCgCGCGGCaCCCUCUCggucucgggcUCGCUCc -3'
miRNA:   3'- gC-GCGG-GCGUCG-GGGAGAG----------GGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 168 0.66 0.550666
Target:  5'- -aCGCCCGC-GCCCCcaaacacgCUCUCGCa-- -3'
miRNA:   3'- gcGCGGGCGuCGGGGa-------GAGGGCGagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.