miRNA display CGI


Results 41 - 60 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 62302 0.66 0.573079
Target:  5'- cCGaGCCCGCGcgcagacggaaaaccGCCCCUCgcuggcggagCCCGCg-- -3'
miRNA:   3'- -GCgCGGGCGU---------------CGGGGAGa---------GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 186490 0.66 0.578717
Target:  5'- aGgGCCCgGCGGCgCgCCUC-CCCGC-CGu -3'
miRNA:   3'- gCgCGGG-CGUCG-G-GGAGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 46500 0.66 0.578717
Target:  5'- uCGgGCUCGCGcacGCCUgUaauagugugugcCUCCCGCUCGu -3'
miRNA:   3'- -GCgCGGGCGU---CGGGgA------------GAGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 40572 0.66 0.578717
Target:  5'- uCGCGCCguccuggcCGCGGgCCCUCUCCUcCg-- -3'
miRNA:   3'- -GCGCGG--------GCGUCgGGGAGAGGGcGagu -5'
10885 5' -65.3 NC_002794.1 + 68109 0.66 0.578717
Target:  5'- cCGUGUugaaCCGCGGCCUCgagaUCCUGCUg- -3'
miRNA:   3'- -GCGCG----GGCGUCGGGGag--AGGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 168 0.66 0.550666
Target:  5'- -aCGCCCGC-GCCCCcaaacacgCUCUCGCa-- -3'
miRNA:   3'- gcGCGGGCGuCGGGGa-------GAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 191805 0.66 0.558109
Target:  5'- -cCGCCCGCucGGCCgCUCgaggaccgcgagCUCGCUCGa -3'
miRNA:   3'- gcGCGGGCG--UCGGgGAGa-----------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 183021 0.66 0.523957
Target:  5'- gCGCGCCCGCcGCCCCggacgaagaagcacgCguaguagCCCaggucGCUCGc -3'
miRNA:   3'- -GCGCGGGCGuCGGGGa--------------Ga------GGG-----CGAGU- -5'
10885 5' -65.3 NC_002794.1 + 190365 0.66 0.523045
Target:  5'- cCGCGCggCGCAGCgggugCUCCCGCUCc -3'
miRNA:   3'- -GCGCGg-GCGUCGggga-GAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 57440 0.66 0.532196
Target:  5'- gGCGCCCGUcauccAGCaCCUgCUccacgcgcugcgCCCGCUCGu -3'
miRNA:   3'- gCGCGGGCG-----UCG-GGGaGA------------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 31386 0.66 0.541405
Target:  5'- cCGuCGUCgGCGGCCCCgccgCgCCCGC-CGc -3'
miRNA:   3'- -GC-GCGGgCGUCGGGGa---GaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 193129 0.66 0.541405
Target:  5'- uCGuCGgCgGCAGCUCCUCgugCCCGUaCAg -3'
miRNA:   3'- -GC-GCgGgCGUCGGGGAGa--GGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 154832 0.66 0.541405
Target:  5'- gGCGUCCGCGGCUUC-CUCCaagugaGuCUCGu -3'
miRNA:   3'- gCGCGGGCGUCGGGGaGAGGg-----C-GAGU- -5'
10885 5' -65.3 NC_002794.1 + 75412 0.66 0.541405
Target:  5'- -uCGUCCGCcGUCuCCUCagCCCGCUCc -3'
miRNA:   3'- gcGCGGGCGuCGG-GGAGa-GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 35448 0.66 0.550666
Target:  5'- aGCuGCCUGCGGCUgaucgccagcugCCUCUaCCUGUUCu -3'
miRNA:   3'- gCG-CGGGCGUCGG------------GGAGA-GGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 189894 0.66 0.541405
Target:  5'- uCGgGCCCGCcgucagcGCCgCCgcgCgaccgCCCGCUCGc -3'
miRNA:   3'- -GCgCGGGCGu------CGG-GGa--Ga----GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 41911 0.66 0.541405
Target:  5'- gCGCGCCaCG-AGCCCCUCgugggccagCCCGaagugCAc -3'
miRNA:   3'- -GCGCGG-GCgUCGGGGAGa--------GGGCga---GU- -5'
10885 5' -65.3 NC_002794.1 + 60889 0.66 0.550666
Target:  5'- gGCG-CCGUGGUCCCcaUCCCGUUCc -3'
miRNA:   3'- gCGCgGGCGUCGGGGagAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 57948 0.66 0.550666
Target:  5'- aCGCGCUgCGCAGCCUgUgccaCCCGCUg- -3'
miRNA:   3'- -GCGCGG-GCGUCGGGgAga--GGGCGAgu -5'
10885 5' -65.3 NC_002794.1 + 100563 0.66 0.550666
Target:  5'- cCGUGgCCgaGCGGCaCCUCUUCaCGCUCGg -3'
miRNA:   3'- -GCGCgGG--CGUCGgGGAGAGG-GCGAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.