miRNA display CGI


Results 101 - 119 of 119 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10885 5' -65.3 NC_002794.1 + 126445 0.68 0.452345
Target:  5'- gGCGCCU-CGGCCCUgggUCCgGCUCGu -3'
miRNA:   3'- gCGCGGGcGUCGGGGag-AGGgCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 144075 0.67 0.460906
Target:  5'- aCGCGUCCGacgagguGGCCUggCUgUCCCGCUUg -3'
miRNA:   3'- -GCGCGGGCg------UCGGG--GAgAGGGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 131392 0.68 0.443871
Target:  5'- cCGCGCCCGUcaucacGGCCUCg--CCCGUgaUCGg -3'
miRNA:   3'- -GCGCGGGCG------UCGGGGagaGGGCG--AGU- -5'
10885 5' -65.3 NC_002794.1 + 36725 0.67 0.495973
Target:  5'- gGCGCUcgCGCAGCCCgUucacguagaaCUCCCGgUCc -3'
miRNA:   3'- gCGCGG--GCGUCGGGgA----------GAGGGCgAGu -5'
10885 5' -65.3 NC_002794.1 + 95242 0.67 0.495973
Target:  5'- --gGUUCGCGGCCCCguuugUCgagCCUGCUCGa -3'
miRNA:   3'- gcgCGGGCGUCGGGG-----AGa--GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 69032 0.67 0.504929
Target:  5'- gGCGCCCucgcCGGCuUCCUCgCuCCGCUCGc -3'
miRNA:   3'- gCGCGGGc---GUCG-GGGAGaG-GGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 187042 0.67 0.513954
Target:  5'- cCG-GCUCGCAGUCCCggagCCCGCg-- -3'
miRNA:   3'- -GCgCGGGCGUCGGGGaga-GGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 111756 0.67 0.513954
Target:  5'- gGCGCCgCGCGGCgCCgUCggggcgggCUCGUUCGu -3'
miRNA:   3'- gCGCGG-GCGUCG-GGgAGa-------GGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 64284 0.67 0.513954
Target:  5'- gGCGCucuacgcccaCCGCGGCCCCg-UCgUGCUCc -3'
miRNA:   3'- gCGCG----------GGCGUCGGGGagAGgGCGAGu -5'
10885 5' -65.3 NC_002794.1 + 191520 0.67 0.513954
Target:  5'- aGCGCCgggCGuCGGCCCgCgcCUCCCGCcgCAg -3'
miRNA:   3'- gCGCGG---GC-GUCGGG-Ga-GAGGGCGa-GU- -5'
10885 5' -65.3 NC_002794.1 + 90723 0.67 0.504929
Target:  5'- aCGUGCUCGCGGCCCUgucgCUgugcgaCCGgUCGu -3'
miRNA:   3'- -GCGCGGGCGUCGGGGa---GAg-----GGCgAGU- -5'
10885 5' -65.3 NC_002794.1 + 145773 0.67 0.504929
Target:  5'- aGCGCCaCGCGGagucguCCCCgg-CCgGCUCGg -3'
miRNA:   3'- gCGCGG-GCGUC------GGGGagaGGgCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 61127 0.67 0.504929
Target:  5'- uCGUGCuCUGCGcGCCCCUgCUgCCGCcCGa -3'
miRNA:   3'- -GCGCG-GGCGU-CGGGGA-GAgGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 151604 0.67 0.504929
Target:  5'- gCGgGCCCGCGGUUCCUCggcugacggCCgGCa-- -3'
miRNA:   3'- -GCgCGGGCGUCGGGGAGa--------GGgCGagu -5'
10885 5' -65.3 NC_002794.1 + 187517 0.67 0.504929
Target:  5'- gGCGCCCGCGGaggaaCUC-CCCGC-CGc -3'
miRNA:   3'- gCGCGGGCGUCggg--GAGaGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 137092 0.67 0.504929
Target:  5'- uGuCGCCCGCucgcGCUCCUuccgcgacCUCCCGCcCGa -3'
miRNA:   3'- gC-GCGGGCGu---CGGGGA--------GAGGGCGaGU- -5'
10885 5' -65.3 NC_002794.1 + 113956 0.67 0.504929
Target:  5'- gGCuuCCUGCAGCCa--CUCCUGCUCGc -3'
miRNA:   3'- gCGc-GGGCGUCGGggaGAGGGCGAGU- -5'
10885 5' -65.3 NC_002794.1 + 93078 0.67 0.504929
Target:  5'- aGCGCCUGUucccgGGCUgcggCCUCUCCUGCc-- -3'
miRNA:   3'- gCGCGGGCG-----UCGG----GGAGAGGGCGagu -5'
10885 5' -65.3 NC_002794.1 + 55062 0.68 0.452345
Target:  5'- aGCGCgCCGUcGCCCCcggUC-CCCGC-CAg -3'
miRNA:   3'- gCGCG-GGCGuCGGGG---AGaGGGCGaGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.