miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10886 3' -49.3 NC_002794.1 + 138586 0.66 0.999393
Target:  5'- --cGAGGcgCGUCGGcgcggcGGAGAGCGGCu -3'
miRNA:   3'- gucUUCCaaGCAGUC------CCUUUCGUUGu -5'
10886 3' -49.3 NC_002794.1 + 141431 0.66 0.999251
Target:  5'- gCGGcGGGggCGcCGGGGGcgccggGAGCGGCGc -3'
miRNA:   3'- -GUCuUCCaaGCaGUCCCU------UUCGUUGU- -5'
10886 3' -49.3 NC_002794.1 + 40072 0.66 0.999081
Target:  5'- gGGGAGGgaaacCGgggCGGGGAGGGaaaGACAu -3'
miRNA:   3'- gUCUUCCaa---GCa--GUCCCUUUCg--UUGU- -5'
10886 3' -49.3 NC_002794.1 + 124169 0.66 0.999081
Target:  5'- cCGGGAGag-CGUCGGGGAGGG-GACu -3'
miRNA:   3'- -GUCUUCcaaGCAGUCCCUUUCgUUGu -5'
10886 3' -49.3 NC_002794.1 + 115537 0.66 0.998878
Target:  5'- -cGGAGGaagUCGUCcagcucGGGGGAGUAGCc -3'
miRNA:   3'- guCUUCCa--AGCAGu-----CCCUUUCGUUGu -5'
10886 3' -49.3 NC_002794.1 + 156456 0.67 0.998029
Target:  5'- aAGgcGGUUgGUUAGGGGgcGGGgGACGa -3'
miRNA:   3'- gUCuuCCAAgCAGUCCCU--UUCgUUGU- -5'
10886 3' -49.3 NC_002794.1 + 109146 0.68 0.996113
Target:  5'- aGGAGGGggaGgCGGGGGAgauGGCGACGa -3'
miRNA:   3'- gUCUUCCaagCaGUCCCUU---UCGUUGU- -5'
10886 3' -49.3 NC_002794.1 + 66639 0.7 0.977929
Target:  5'- gAGGAGGUcCGUCcGGGGGcaucGGUAACGg -3'
miRNA:   3'- gUCUUCCAaGCAGuCCCUU----UCGUUGU- -5'
10886 3' -49.3 NC_002794.1 + 189299 0.74 0.905739
Target:  5'- cCAGGAGGUggUCGUgCAGuucgggcagcuggucGGggGGCAGCAg -3'
miRNA:   3'- -GUCUUCCA--AGCA-GUC---------------CCuuUCGUUGU- -5'
10886 3' -49.3 NC_002794.1 + 142681 0.74 0.896496
Target:  5'- uGGAacAGGUggUUGUCGGGGAGGGCGGa- -3'
miRNA:   3'- gUCU--UCCA--AGCAGUCCCUUUCGUUgu -5'
10886 3' -49.3 NC_002794.1 + 115904 0.75 0.867452
Target:  5'- gCGGggGGUUCGUgGGGuGGAcuuggcgcGGCGGCGg -3'
miRNA:   3'- -GUCuuCCAAGCAgUCC-CUU--------UCGUUGU- -5'
10886 3' -49.3 NC_002794.1 + 149441 0.75 0.867452
Target:  5'- gGGAAGGcUCGaucUCGGGGAAGGgGGCGg -3'
miRNA:   3'- gUCUUCCaAGC---AGUCCCUUUCgUUGU- -5'
10886 3' -49.3 NC_002794.1 + 22070 1.09 0.01441
Target:  5'- gCAGAAGGUUCGUCAGGGAAAGCAACAg -3'
miRNA:   3'- -GUCUUCCAAGCAGUCCCUUUCGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.