miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10886 5' -63.3 NC_002794.1 + 143747 0.66 0.678755
Target:  5'- gGACG-CGCC-GCcGGGGgGCUCCgCUCg -3'
miRNA:   3'- -UUGCaGCGGcCGaCCCUgCGAGG-GGG- -5'
10886 5' -63.3 NC_002794.1 + 107050 0.66 0.678755
Target:  5'- cGCGUCGgaGGCgGcGGGCGCggcgCCgCCg -3'
miRNA:   3'- uUGCAGCggCCGaC-CCUGCGa---GGgGG- -5'
10886 5' -63.3 NC_002794.1 + 107933 0.66 0.678755
Target:  5'- cGCGUCGaagagCGGCUGGcuCGCUaCCCgCg -3'
miRNA:   3'- uUGCAGCg----GCCGACCcuGCGA-GGGgG- -5'
10886 5' -63.3 NC_002794.1 + 22866 0.66 0.678755
Target:  5'- gGACGUC-CCGGCcGucgcGCGCUUCCCUg -3'
miRNA:   3'- -UUGCAGcGGCCGaCcc--UGCGAGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 71781 0.66 0.678755
Target:  5'- -cCGUCGCgCGGCga-GuCGC-CCCCCg -3'
miRNA:   3'- uuGCAGCG-GCCGaccCuGCGaGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 12222 0.66 0.669233
Target:  5'- cGGCGUCGgCGGCgccGGcGGCGC-CgUCCg -3'
miRNA:   3'- -UUGCAGCgGCCGa--CC-CUGCGaGgGGG- -5'
10886 5' -63.3 NC_002794.1 + 143488 0.66 0.666371
Target:  5'- cGAUGUCGCUGGCcgcgGGGcugcagaugaggaaGCGCacgUCgCCCg -3'
miRNA:   3'- -UUGCAGCGGCCGa---CCC--------------UGCG---AGgGGG- -5'
10886 5' -63.3 NC_002794.1 + 192733 0.66 0.659685
Target:  5'- --gGUCGUCGGCcagccGGuacaccucGCGCUCCUCCa -3'
miRNA:   3'- uugCAGCGGCCGac---CC--------UGCGAGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 189653 0.66 0.659685
Target:  5'- uGACua-GCCGGCUGGccgaGCGgUCgCCCCg -3'
miRNA:   3'- -UUGcagCGGCCGACCc---UGCgAG-GGGG- -5'
10886 5' -63.3 NC_002794.1 + 151731 0.66 0.650117
Target:  5'- gGACGUCGUCGGCcgccGGucgccucgcGCGCUCgUCCu -3'
miRNA:   3'- -UUGCAGCGGCCGac--CC---------UGCGAGgGGG- -5'
10886 5' -63.3 NC_002794.1 + 44549 0.66 0.650117
Target:  5'- -uCGUCGCCGGC-GGcGGCGC-CCgUUg -3'
miRNA:   3'- uuGCAGCGGCCGaCC-CUGCGaGGgGG- -5'
10886 5' -63.3 NC_002794.1 + 181536 0.66 0.650117
Target:  5'- -cCGcCGCCGGCgGGccGGCGCUCUCg- -3'
miRNA:   3'- uuGCaGCGGCCGaCC--CUGCGAGGGgg -5'
10886 5' -63.3 NC_002794.1 + 142409 0.66 0.650117
Target:  5'- cGGCGUCGgCGGCgccGGGCGCgauuaggaaaUUCUCCg -3'
miRNA:   3'- -UUGCAGCgGCCGac-CCUGCG----------AGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 124133 0.66 0.650117
Target:  5'- cGCGUCuCCGGCgcccGGGAgCGgUCUCCg -3'
miRNA:   3'- uUGCAGcGGCCGa---CCCU-GCgAGGGGg -5'
10886 5' -63.3 NC_002794.1 + 184146 0.66 0.64916
Target:  5'- uGGCGUucggaucCGCCGGCgacGGCGuCUCCaCCCg -3'
miRNA:   3'- -UUGCA-------GCGGCCGaccCUGC-GAGG-GGG- -5'
10886 5' -63.3 NC_002794.1 + 42666 0.66 0.646286
Target:  5'- cGGCGcCGCCGGCacgGGGuACGCcgagaccggcgagCCCgCCu -3'
miRNA:   3'- -UUGCaGCGGCCGa--CCC-UGCGa------------GGG-GG- -5'
10886 5' -63.3 NC_002794.1 + 34746 0.66 0.630951
Target:  5'- gAGCG-CGCgaCGGCgcggUGGGACGCggcacggCCgCCCg -3'
miRNA:   3'- -UUGCaGCG--GCCG----ACCCUGCGa------GG-GGG- -5'
10886 5' -63.3 NC_002794.1 + 43894 0.66 0.630951
Target:  5'- -cCGUCGCCGGCgucucgugaGGagcGGCGCggucagCCCCg -3'
miRNA:   3'- uuGCAGCGGCCGa--------CC---CUGCGa-----GGGGg -5'
10886 5' -63.3 NC_002794.1 + 187760 0.67 0.611788
Target:  5'- gAACGcCGCCGGCgccGGuCGCcucgaCCCCg -3'
miRNA:   3'- -UUGCaGCGGCCGac-CCuGCGag---GGGG- -5'
10886 5' -63.3 NC_002794.1 + 156201 0.67 0.611788
Target:  5'- --aGUCGCCGGUcggaGGGccgGCGaCUCCgCCg -3'
miRNA:   3'- uugCAGCGGCCGa---CCC---UGC-GAGGgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.