miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10886 5' -63.3 NC_002794.1 + 498 0.76 0.175542
Target:  5'- -cCGUCGCCuGGgUGGGGCGUUgCCUCCg -3'
miRNA:   3'- uuGCAGCGG-CCgACCCUGCGA-GGGGG- -5'
10886 5' -63.3 NC_002794.1 + 889 0.67 0.564217
Target:  5'- uGCG-CGCgGGCcGGGugccaacgcCGCUCCCCg -3'
miRNA:   3'- uUGCaGCGgCCGaCCCu--------GCGAGGGGg -5'
10886 5' -63.3 NC_002794.1 + 11818 0.67 0.602224
Target:  5'- -cCGUCGCCGcCUu---CGCUCCCCCc -3'
miRNA:   3'- uuGCAGCGGCcGAcccuGCGAGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 12020 0.71 0.366275
Target:  5'- uGCGcCGCCGGCccGGGcguccGCGCcuUCCCCUg -3'
miRNA:   3'- uUGCaGCGGCCGa-CCC-----UGCG--AGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 12222 0.66 0.669233
Target:  5'- cGGCGUCGgCGGCgccGGcGGCGC-CgUCCg -3'
miRNA:   3'- -UUGCAGCgGCCGa--CC-CUGCGaGgGGG- -5'
10886 5' -63.3 NC_002794.1 + 13288 0.67 0.564217
Target:  5'- -uUGaCGgCGGCaUGGG-CGCUUCCCCc -3'
miRNA:   3'- uuGCaGCgGCCG-ACCCuGCGAGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 22105 1.08 0.001025
Target:  5'- aAACGUCGCCGGCUGGGACGCUCCCCCu -3'
miRNA:   3'- -UUGCAGCGGCCGACCCUGCGAGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 22866 0.66 0.678755
Target:  5'- gGACGUC-CCGGCcGucgcGCGCUUCCCUg -3'
miRNA:   3'- -UUGCAGcGGCCGaCcc--UGCGAGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 34746 0.66 0.630951
Target:  5'- gAGCG-CGCgaCGGCgcggUGGGACGCggcacggCCgCCCg -3'
miRNA:   3'- -UUGCaGCG--GCCG----ACCCUGCGa------GG-GGG- -5'
10886 5' -63.3 NC_002794.1 + 35778 0.68 0.554806
Target:  5'- -cCGUCGCCGGCgucgucuccGGCGUgacccugcgCCCCCg -3'
miRNA:   3'- uuGCAGCGGCCGacc------CUGCGa--------GGGGG- -5'
10886 5' -63.3 NC_002794.1 + 42666 0.66 0.646286
Target:  5'- cGGCGcCGCCGGCacgGGGuACGCcgagaccggcgagCCCgCCu -3'
miRNA:   3'- -UUGCaGCGGCCGa--CCC-UGCGa------------GGG-GG- -5'
10886 5' -63.3 NC_002794.1 + 43894 0.66 0.630951
Target:  5'- -cCGUCGCCGGCgucucgugaGGagcGGCGCggucagCCCCg -3'
miRNA:   3'- uuGCAGCGGCCGa--------CC---CUGCGa-----GGGGg -5'
10886 5' -63.3 NC_002794.1 + 44549 0.66 0.650117
Target:  5'- -uCGUCGCCGGC-GGcGGCGC-CCgUUg -3'
miRNA:   3'- uuGCAGCGGCCGaCC-CUGCGaGGgGG- -5'
10886 5' -63.3 NC_002794.1 + 45908 0.72 0.316194
Target:  5'- -cCGcCGCCGGCaccGGGcgacgaggcucGCGCUUCCCCg -3'
miRNA:   3'- uuGCaGCGGCCGa--CCC-----------UGCGAGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 47953 0.82 0.070957
Target:  5'- cGCGUcccggCGCCGGCUGGGcgaccgccgcGCGCUCCUCCg -3'
miRNA:   3'- uUGCA-----GCGGCCGACCC----------UGCGAGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 48897 0.69 0.446743
Target:  5'- cAGCGUUGCCGcaGCUcGGGGcCGCUCCgCa -3'
miRNA:   3'- -UUGCAGCGGC--CGA-CCCU-GCGAGGgGg -5'
10886 5' -63.3 NC_002794.1 + 50579 0.67 0.57367
Target:  5'- cGGCGUgCGCggCGGCUGGGugGCcggCgCCg -3'
miRNA:   3'- -UUGCA-GCG--GCCGACCCugCGa--GgGGg -5'
10886 5' -63.3 NC_002794.1 + 50794 0.68 0.545442
Target:  5'- cGGCGccuccUCGcCCGGCgucGGGCGCUccggcgCCCCCg -3'
miRNA:   3'- -UUGC-----AGC-GGCCGac-CCUGCGA------GGGGG- -5'
10886 5' -63.3 NC_002794.1 + 65938 0.69 0.500385
Target:  5'- uGGCGUCGgCGGCgguaucgucgcgagcGGcGGCGuCUCCUCCg -3'
miRNA:   3'- -UUGCAGCgGCCGa--------------CC-CUGC-GAGGGGG- -5'
10886 5' -63.3 NC_002794.1 + 68831 0.67 0.583159
Target:  5'- cGACGcCGCCGGCgcucGCGgUCCCCg -3'
miRNA:   3'- -UUGCaGCGGCCGacccUGCgAGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.