miRNA display CGI


Results 1 - 20 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 190028 0.66 0.619965
Target:  5'- gGCGGcCGGUaGCGcacGUAGCGcugacucaucgugucGCCGCGGUg -3'
miRNA:   3'- -CGUC-GCCGcCGC---CGUCGC---------------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 107587 0.66 0.619965
Target:  5'- aCGGCGGagaagaCGGCGGgggagacggggaagaCGGgGACgGUGGCg -3'
miRNA:   3'- cGUCGCC------GCCGCC---------------GUCgCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 21940 0.66 0.616179
Target:  5'- cGCGGCgcucgucgaaGGCcGuCGGCcGCucCCGCGGCg -3'
miRNA:   3'- -CGUCG----------CCGcC-GCCGuCGcuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 37767 0.66 0.616179
Target:  5'- cCGGCGG-GaGCGGCcgucgucGuCGGCCGCaGGCg -3'
miRNA:   3'- cGUCGCCgC-CGCCGu------C-GCUGGCG-CCG- -5'
10887 3' -64.7 NC_002794.1 + 159298 0.66 0.616179
Target:  5'- -gGGCGGaGGUGGCAGCuaGCCauuCGGUa -3'
miRNA:   3'- cgUCGCCgCCGCCGUCGc-UGGc--GCCG- -5'
10887 3' -64.7 NC_002794.1 + 123333 0.66 0.614287
Target:  5'- cGCAGCuGGgGGUGGCGuuccaacgguacCGGCCGCucugcgugGGCu -3'
miRNA:   3'- -CGUCG-CCgCCGCCGUc-----------GCUGGCG--------CCG- -5'
10887 3' -64.7 NC_002794.1 + 19527 0.66 0.606723
Target:  5'- aGCGcCGGC-GCGGC-GCGGCCcGcCGGUg -3'
miRNA:   3'- -CGUcGCCGcCGCCGuCGCUGG-C-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 68548 0.66 0.606723
Target:  5'- cGCGGCcgacaaGCuGCGGguGUcGCCGaCGGCg -3'
miRNA:   3'- -CGUCGc-----CGcCGCCguCGcUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 134197 0.66 0.606723
Target:  5'- uCGGCuGGUGGgGGCcgucggucgccaAGCGACCGCc-- -3'
miRNA:   3'- cGUCG-CCGCCgCCG------------UCGCUGGCGccg -5'
10887 3' -64.7 NC_002794.1 + 117369 0.66 0.606723
Target:  5'- aGCGGCGGgccgccugcaCGGUcGCGGCGAa-GCGGg -3'
miRNA:   3'- -CGUCGCC----------GCCGcCGUCGCUggCGCCg -5'
10887 3' -64.7 NC_002794.1 + 48223 0.66 0.606723
Target:  5'- gGCAGagcaGGCGGCcGCcaucguuCGGCCGCaGCa -3'
miRNA:   3'- -CGUCg---CCGCCGcCGuc-----GCUGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 186870 0.66 0.606723
Target:  5'- aGCAGCaGCGGgcuCGGCucGCGGUC-CGGCg -3'
miRNA:   3'- -CGUCGcCGCC---GCCGu-CGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 78110 0.66 0.606723
Target:  5'- --cGCGGCGGCGccucCAGaCGccgcccgaGCCGCGaGCg -3'
miRNA:   3'- cguCGCCGCCGCc---GUC-GC--------UGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 98368 0.66 0.606723
Target:  5'- cGC-GCGGCuGGCGGgAgacGUGAUCGCguuGGCc -3'
miRNA:   3'- -CGuCGCCG-CCGCCgU---CGCUGGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 105545 0.66 0.606723
Target:  5'- cCGGCGGCGGCucgGGCgaacggauAGgGugCGCGuagaGCa -3'
miRNA:   3'- cGUCGCCGCCG---CCG--------UCgCugGCGC----CG- -5'
10887 3' -64.7 NC_002794.1 + 145894 0.66 0.606723
Target:  5'- aGCGGCGaGCGcGaCGGgGGaguCGACCGCGccgaGCg -3'
miRNA:   3'- -CGUCGC-CGC-C-GCCgUC---GCUGGCGC----CG- -5'
10887 3' -64.7 NC_002794.1 + 54016 0.66 0.606723
Target:  5'- cGCAGCacGGCcgccuucuugGGCGucaGCuGCGACCcgucgacgugGCGGCa -3'
miRNA:   3'- -CGUCG--CCG----------CCGC---CGuCGCUGG----------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 180079 0.66 0.606723
Target:  5'- -aAGCGGCGGaCGGUAuCgGugCGCagGGCu -3'
miRNA:   3'- cgUCGCCGCC-GCCGUcG-CugGCG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 148642 0.66 0.606723
Target:  5'- cGCGGCGGCGuGCucGGCuacgcGcCGACCGaGGa -3'
miRNA:   3'- -CGUCGCCGC-CG--CCGu----C-GCUGGCgCCg -5'
10887 3' -64.7 NC_002794.1 + 138588 0.66 0.597282
Target:  5'- -aGGCGcGuCGGC-GCGGCGGagaGCGGCu -3'
miRNA:   3'- cgUCGC-C-GCCGcCGUCGCUgg-CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.