miRNA display CGI


Results 41 - 60 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 58543 0.66 0.597282
Target:  5'- cGCcGCGGCGcGCGcGCuGCuGGCgCGCuGCg -3'
miRNA:   3'- -CGuCGCCGC-CGC-CGuCG-CUG-GCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 117369 0.66 0.606723
Target:  5'- aGCGGCGGgccgccugcaCGGUcGCGGCGAa-GCGGg -3'
miRNA:   3'- -CGUCGCC----------GCCGcCGUCGCUggCGCCg -5'
10887 3' -64.7 NC_002794.1 + 134197 0.66 0.606723
Target:  5'- uCGGCuGGUGGgGGCcgucggucgccaAGCGACCGCc-- -3'
miRNA:   3'- cGUCG-CCGCCgCCG------------UCGCUGGCGccg -5'
10887 3' -64.7 NC_002794.1 + 68548 0.66 0.606723
Target:  5'- cGCGGCcgacaaGCuGCGGguGUcGCCGaCGGCg -3'
miRNA:   3'- -CGUCGc-----CGcCGCCguCGcUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 19527 0.66 0.606723
Target:  5'- aGCGcCGGC-GCGGC-GCGGCCcGcCGGUg -3'
miRNA:   3'- -CGUcGCCGcCGCCGuCGCUGG-C-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 186870 0.66 0.606723
Target:  5'- aGCAGCaGCGGgcuCGGCucGCGGUC-CGGCg -3'
miRNA:   3'- -CGUCGcCGCC---GCCGu-CGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 78110 0.66 0.606723
Target:  5'- --cGCGGCGGCGccucCAGaCGccgcccgaGCCGCGaGCg -3'
miRNA:   3'- cguCGCCGCCGCc---GUC-GC--------UGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 53273 0.67 0.557007
Target:  5'- aCAaCGG-GGCGGCgAGCGACCacuccaggugccgaGCGGUc -3'
miRNA:   3'- cGUcGCCgCCGCCG-UCGCUGG--------------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 146327 0.67 0.554223
Target:  5'- cGC-GCGGCGGauuCGaccccgucgucgaucGCGGCGGCCGCccgGGUa -3'
miRNA:   3'- -CGuCGCCGCC---GC---------------CGUCGCUGGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 143280 0.67 0.550518
Target:  5'- gGCGcCGGCcgcucggggucgGGCGGguGC-AgCGCGGCg -3'
miRNA:   3'- -CGUcGCCG------------CCGCCguCGcUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 116907 0.67 0.550518
Target:  5'- cCGGCGGcCGGUccGGCGuCGGCUcCGGCg -3'
miRNA:   3'- cGUCGCC-GCCG--CCGUcGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 49600 0.67 0.550518
Target:  5'- cGCGauCGGCGaCGGCgGGCGcCgGCGGCg -3'
miRNA:   3'- -CGUc-GCCGCcGCCG-UCGCuGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 185552 0.67 0.557007
Target:  5'- cCGGCcGCGcgccccgcccugccGCGGCAG-GGCgCGCGGCu -3'
miRNA:   3'- cGUCGcCGC--------------CGCCGUCgCUG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 187222 0.67 0.558865
Target:  5'- cCAGCGGCuccggcuGGCcGCAGCacaGAuaGCGGCu -3'
miRNA:   3'- cGUCGCCG-------CCGcCGUCG---CUggCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 21879 0.67 0.559795
Target:  5'- -aGGcCGGCcGCGG-GGUGuCCGCGGCc -3'
miRNA:   3'- cgUC-GCCGcCGCCgUCGCuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 266 0.67 0.559795
Target:  5'- cGC-GCGcGCGGacgcgaGGaCGGCGGCCcUGGCg -3'
miRNA:   3'- -CGuCGC-CGCCg-----CC-GUCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 126609 0.67 0.559795
Target:  5'- -aGGcCGGCGccgacgucGCGGCGugagcGCGACCG-GGCg -3'
miRNA:   3'- cgUC-GCCGC--------CGCCGU-----CGCUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 150399 0.67 0.559795
Target:  5'- cGCccUGGuuGCGGCAGaaGCCGUGGCc -3'
miRNA:   3'- -CGucGCCgcCGCCGUCgcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 58755 0.67 0.559795
Target:  5'- gGCAGCuGGCGGaGG-AGCcGCUGCuGGCc -3'
miRNA:   3'- -CGUCG-CCGCCgCCgUCGcUGGCG-CCG- -5'
10887 3' -64.7 NC_002794.1 + 187499 0.67 0.550518
Target:  5'- gGCcGC-GCaGGCGGCcagGGCGcCCGCGGa -3'
miRNA:   3'- -CGuCGcCG-CCGCCG---UCGCuGGCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.