miRNA display CGI


Results 61 - 80 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 34747 0.67 0.52299
Target:  5'- aGCGcGCGaCGGC-GCGGUGGgaCGCGGCa -3'
miRNA:   3'- -CGU-CGCcGCCGcCGUCGCUg-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 4246 0.67 0.522082
Target:  5'- cGguGCGGCucucGGUGGUcucgaucGGUGACgGUGGUc -3'
miRNA:   3'- -CguCGCCG----CCGCCG-------UCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 183205 0.67 0.520266
Target:  5'- aCGcCGGCGGCGcGUucgucgccAGCGACCaggcgacccgacacGCGGCg -3'
miRNA:   3'- cGUcGCCGCCGC-CG--------UCGCUGG--------------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 102508 0.67 0.550518
Target:  5'- uGCAGCGGCuGGCGcGCGcGCGGgacgaccucuucUCG-GGCc -3'
miRNA:   3'- -CGUCGCCG-CCGC-CGU-CGCU------------GGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 47342 0.67 0.548667
Target:  5'- --cGCGGCGGCGGCcuccggacguucGCGcucaaGCCGaGGCc -3'
miRNA:   3'- cguCGCCGCCGCCGu-----------CGC-----UGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 58755 0.67 0.559795
Target:  5'- gGCAGCuGGCGGaGG-AGCcGCUGCuGGCc -3'
miRNA:   3'- -CGUCG-CCGCCgCCgUCGcUGGCG-CCG- -5'
10887 3' -64.7 NC_002794.1 + 150399 0.67 0.559795
Target:  5'- cGCccUGGuuGCGGCAGaaGCCGUGGCc -3'
miRNA:   3'- -CGucGCCgcCGCCGUCgcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 126609 0.67 0.559795
Target:  5'- -aGGcCGGCGccgacgucGCGGCGugagcGCGACCG-GGCg -3'
miRNA:   3'- cgUC-GCCGC--------CGCCGU-----CGCUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 266 0.67 0.559795
Target:  5'- cGC-GCGcGCGGacgcgaGGaCGGCGGCCcUGGCg -3'
miRNA:   3'- -CGuCGC-CGCCg-----CC-GUCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 21879 0.67 0.559795
Target:  5'- -aGGcCGGCcGCGG-GGUGuCCGCGGCc -3'
miRNA:   3'- cgUC-GCCGcCGCCgUCGCuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 187222 0.67 0.558865
Target:  5'- cCAGCGGCuccggcuGGCcGCAGCacaGAuaGCGGCu -3'
miRNA:   3'- cGUCGCCG-------CCGcCGUCG---CUggCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 185552 0.67 0.557007
Target:  5'- cCGGCcGCGcgccccgcccugccGCGGCAG-GGCgCGCGGCu -3'
miRNA:   3'- cGUCGcCGC--------------CGCCGUCgCUG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 53273 0.67 0.557007
Target:  5'- aCAaCGG-GGCGGCgAGCGACCacuccaggugccgaGCGGUc -3'
miRNA:   3'- cGUcGCCgCCGCCG-UCGCUGG--------------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 146327 0.67 0.554223
Target:  5'- cGC-GCGGCGGauuCGaccccgucgucgaucGCGGCGGCCGCccgGGUa -3'
miRNA:   3'- -CGuCGCCGCC---GC---------------CGUCGCUGGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 143280 0.67 0.550518
Target:  5'- gGCGcCGGCcgcucggggucgGGCGGguGC-AgCGCGGCg -3'
miRNA:   3'- -CGUcGCCG------------CCGCCguCGcUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 116907 0.67 0.550518
Target:  5'- cCGGCGGcCGGUccGGCGuCGGCUcCGGCg -3'
miRNA:   3'- cGUCGCC-GCCG--CCGUcGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 49600 0.67 0.550518
Target:  5'- cGCGauCGGCGaCGGCgGGCGcCgGCGGCg -3'
miRNA:   3'- -CGUc-GCCGCcGCCG-UCGCuGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 187499 0.67 0.550518
Target:  5'- gGCcGC-GCaGGCGGCcagGGCGcCCGCGGa -3'
miRNA:   3'- -CGuCGcCG-CCGCCG---UCGCuGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 142301 0.67 0.550518
Target:  5'- -aGGCGGUacaGGUGGCGGaGGCgGCGGn -3'
miRNA:   3'- cgUCGCCG---CCGCCGUCgCUGgCGCCg -5'
10887 3' -64.7 NC_002794.1 + 123794 0.67 0.550518
Target:  5'- -aGGCGGUGGCGccguucgggggcGCGGaCGAgCaggaGCGGCg -3'
miRNA:   3'- cgUCGCCGCCGC------------CGUC-GCU-Gg---CGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.