miRNA display CGI


Results 81 - 100 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 142301 0.67 0.550518
Target:  5'- -aGGCGGUacaGGUGGCGGaGGCgGCGGn -3'
miRNA:   3'- cgUCGCCG---CCGCCGUCgCUGgCGCCg -5'
10887 3' -64.7 NC_002794.1 + 187499 0.67 0.550518
Target:  5'- gGCcGC-GCaGGCGGCcagGGCGcCCGCGGa -3'
miRNA:   3'- -CGuCGcCG-CCGCCG---UCGCuGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 49600 0.67 0.550518
Target:  5'- cGCGauCGGCGaCGGCgGGCGcCgGCGGCg -3'
miRNA:   3'- -CGUc-GCCGCcGCCG-UCGCuGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 116907 0.67 0.550518
Target:  5'- cCGGCGGcCGGUccGGCGuCGGCUcCGGCg -3'
miRNA:   3'- cGUCGCC-GCCG--CCGUcGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 143280 0.67 0.550518
Target:  5'- gGCGcCGGCcgcucggggucgGGCGGguGC-AgCGCGGCg -3'
miRNA:   3'- -CGUcGCCG------------CCGCCguCGcUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 126220 0.68 0.487155
Target:  5'- cCAGCGGUacaagaucgGGaCcGUGGCGAUCGUGGCg -3'
miRNA:   3'- cGUCGCCG---------CC-GcCGUCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 189840 0.68 0.487155
Target:  5'- aCAGCGGgGucuCGGCcGCGgaGCCGuCGGCg -3'
miRNA:   3'- cGUCGCCgCc--GCCGuCGC--UGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 145394 0.68 0.49512
Target:  5'- uCGGUGGCGcGCcGC-GCGGCCuuaaagcGCGGCg -3'
miRNA:   3'- cGUCGCCGC-CGcCGuCGCUGG-------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 48160 0.68 0.496009
Target:  5'- gGCAGCGGCGccgcuucacgccGCuGCAGCGgaACUGCGcCa -3'
miRNA:   3'- -CGUCGCCGC------------CGcCGUCGC--UGGCGCcG- -5'
10887 3' -64.7 NC_002794.1 + 120083 0.68 0.487155
Target:  5'- nCGGUGGCGGCGacgaccguGCcgAGCGcGCCGCGcGUg -3'
miRNA:   3'- cGUCGCCGCCGC--------CG--UCGC-UGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 122201 0.68 0.487155
Target:  5'- cGCGGCGaaGCGGUGcCGGCG-CCgcuacgauaaGCGGCg -3'
miRNA:   3'- -CGUCGC--CGCCGCcGUCGCuGG----------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 113589 0.68 0.496009
Target:  5'- uGCAcGaCGGC-GCGGaguuucucCAGCG-CCGCGGCc -3'
miRNA:   3'- -CGU-C-GCCGcCGCC--------GUCGCuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 137948 0.68 0.496009
Target:  5'- gGCAGCGGCGGauGCGuucGCCGaGGCc -3'
miRNA:   3'- -CGUCGCCGCCgcCGUcgcUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 125015 0.68 0.496009
Target:  5'- aGCGGUccGCGGCGGCcGUcACCaCGGCg -3'
miRNA:   3'- -CGUCGc-CGCCGCCGuCGcUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 71233 0.68 0.496009
Target:  5'- cGUAGUGGCGGcCGGC-GUGGaC-CGGCa -3'
miRNA:   3'- -CGUCGCCGCC-GCCGuCGCUgGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 44171 0.68 0.496009
Target:  5'- gGC-GCGaGCGGCGGCucgucgacuccgGGCGaaGCCG-GGCc -3'
miRNA:   3'- -CGuCGC-CGCCGCCG------------UCGC--UGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 16276 0.68 0.504935
Target:  5'- cGCcGCGccccuguUGGCGGagucuagccuGGCGGCCGCGGCc -3'
miRNA:   3'- -CGuCGCc------GCCGCCg---------UCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 146616 0.68 0.504935
Target:  5'- -aGGCGGCgaggacgucgaaGGCGGUAcCGGgaGCGGCg -3'
miRNA:   3'- cgUCGCCG------------CCGCCGUcGCUggCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 116845 0.68 0.504935
Target:  5'- cGC-GCGGUGGaucuucauGCGGCGGCCGUGucGCg -3'
miRNA:   3'- -CGuCGCCGCCgc------CGUCGCUGGCGC--CG- -5'
10887 3' -64.7 NC_002794.1 + 111126 0.68 0.487155
Target:  5'- aCGGCGcCGGCGGcCGGUGcuccaCGCGGUa -3'
miRNA:   3'- cGUCGCcGCCGCC-GUCGCug---GCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.