Results 21 - 40 of 383 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 19462 | 0.85 | 0.038562 |
Target: 5'- aGCGGCGGCGGCGGCGG-GAcCCGcCGGUc -3' miRNA: 3'- -CGUCGCCGCCGCCGUCgCU-GGC-GCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 12227 | 0.84 | 0.043742 |
Target: 5'- uCGGCGGCGcCGGCGGCGccguCCGCGGCg -3' miRNA: 3'- cGUCGCCGCcGCCGUCGCu---GGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 192007 | 0.84 | 0.041593 |
Target: 5'- gGUAGCGGCGGUGGCcGCGGCUgcuguuucugugGCGGCg -3' miRNA: 3'- -CGUCGCCGCCGCCGuCGCUGG------------CGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 21909 | 0.83 | 0.050861 |
Target: 5'- uCGGUGGUGGCGGCGGagaCGACgGCGGCg -3' miRNA: 3'- cGUCGCCGCCGCCGUC---GCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 127354 | 0.83 | 0.049476 |
Target: 5'- cGCucGCGGCGGCGGC-GCGGCCGCucgugucGGCg -3' miRNA: 3'- -CGu-CGCCGCCGCCGuCGCUGGCG-------CCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 22903 | 0.83 | 0.0496 |
Target: 5'- ---uUGGUGGaCGGCGGCGACCGCGGCc -3' miRNA: 3'- cgucGCCGCC-GCCGUCGCUGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 56160 | 0.83 | 0.05442 |
Target: 5'- cGCAGCGGCaGCGGCcccggugcacguagAGCaccgGGCCGCGGCa -3' miRNA: 3'- -CGUCGCCGcCGCCG--------------UCG----CUGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 106991 | 0.82 | 0.065298 |
Target: 5'- aCGGCGGUGGCGGCGcuggccgacGCGAcggugcucaCCGCGGCg -3' miRNA: 3'- cGUCGCCGCCGCCGU---------CGCU---------GGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 129932 | 0.82 | 0.060595 |
Target: 5'- gGCcGUGGCGaCGGCGGCGGCgGCGGCu -3' miRNA: 3'- -CGuCGCCGCcGCCGUCGCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 32302 | 0.82 | 0.060595 |
Target: 5'- cGCcGCGGCGGCcGCGcCGGCCGCGGCc -3' miRNA: 3'- -CGuCGCCGCCGcCGUcGCUGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 138436 | 0.82 | 0.057643 |
Target: 5'- aGCcGCGGUGGCGGCGGCG-CCuCGGCc -3' miRNA: 3'- -CGuCGCCGCCGCCGUCGCuGGcGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 186283 | 0.82 | 0.059101 |
Target: 5'- cGCGGCGGCaccgcggccaGGCGGcCGGUcGCCGCGGCg -3' miRNA: 3'- -CGUCGCCG----------CCGCC-GUCGcUGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 38436 | 0.82 | 0.062747 |
Target: 5'- -uGGCGGCGGgccggacugaggagcCGGC-GCGGCCGCGGCg -3' miRNA: 3'- cgUCGCCGCC---------------GCCGuCGCUGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 58068 | 0.82 | 0.057643 |
Target: 5'- cCGGCGGCGGCGGgacgGGCGGCC-CGGCg -3' miRNA: 3'- cGUCGCCGCCGCCg---UCGCUGGcGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 65928 | 0.82 | 0.05622 |
Target: 5'- cCGGCGGCGGUGGCGuCGGCgGCGGUa -3' miRNA: 3'- cGUCGCCGCCGCCGUcGCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 142328 | 0.82 | 0.065298 |
Target: 5'- cGCAgGCGGCGGaGGCGGCGGagGCGGCg -3' miRNA: 3'- -CGU-CGCCGCCgCCGUCGCUggCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 191653 | 0.82 | 0.05622 |
Target: 5'- aGCAGCccgccgggggacGGCGcCGGCAGCGGCgGCGGCg -3' miRNA: 3'- -CGUCG------------CCGCcGCCGUCGCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 63455 | 0.82 | 0.064812 |
Target: 5'- cGCGGCGGCgacgaugacgacgaGGCGGCGGcCGccgucgacgacGCCGCGGCg -3' miRNA: 3'- -CGUCGCCG--------------CCGCCGUC-GC-----------UGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 14495 | 0.81 | 0.070353 |
Target: 5'- --cGCGGCGGCGGCccGCGcUCGCGGCg -3' miRNA: 3'- cguCGCCGCCGCCGu-CGCuGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 87351 | 0.81 | 0.070353 |
Target: 5'- aGCAGCGGgucCGGCGGCgAGCGGCguucugggcggCGCGGCc -3' miRNA: 3'- -CGUCGCC---GCCGCCG-UCGCUG-----------GCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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