Results 81 - 100 of 383 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 190735 | 0.76 | 0.159465 |
Target: 5'- cGCAGCGcccgccgccgucucGaCGGgGGCGGCGGCCGCGcGUc -3' miRNA: 3'- -CGUCGC--------------C-GCCgCCGUCGCUGGCGC-CG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 31053 | 0.76 | 0.148541 |
Target: 5'- gGCAGCGGCacGGCGGcCAGCucgcgcagcacgucGAgCGUGGCg -3' miRNA: 3'- -CGUCGCCG--CCGCC-GUCG--------------CUgGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 142152 | 0.76 | 0.160219 |
Target: 5'- gGCGGaGGCGGCGGUAGC-ACCGgcagcguCGGCa -3' miRNA: 3'- -CGUCgCCGCCGCCGUCGcUGGC-------GCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 8118 | 0.76 | 0.168326 |
Target: 5'- -gAGCgGGCGGCGGCcuccucGGUGACCGgcgaCGGCa -3' miRNA: 3'- cgUCG-CCGCCGCCG------UCGCUGGC----GCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 72422 | 0.76 | 0.146092 |
Target: 5'- cGCGGCGGaggaggagcCGGCGG-AGgGACCGgCGGCg -3' miRNA: 3'- -CGUCGCC---------GCCGCCgUCgCUGGC-GCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 61522 | 0.76 | 0.153189 |
Target: 5'- aCGGCGGCcgccGGCGGCcgccGCGaagacgacgccGCCGCGGCg -3' miRNA: 3'- cGUCGCCG----CCGCCGu---CGC-----------UGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 46314 | 0.76 | 0.146092 |
Target: 5'- aGC-GCGGCGGCGaCGGCGccgucGCCGCGGa -3' miRNA: 3'- -CGuCGCCGCCGCcGUCGC-----UGGCGCCg -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 141429 | 0.76 | 0.154645 |
Target: 5'- -gGGCGGCGGgGGCgccgggggcgccgggAGCGG-CGCGGCg -3' miRNA: 3'- cgUCGCCGCCgCCG---------------UCGCUgGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 105905 | 0.76 | 0.146092 |
Target: 5'- cGCcGCGGCGGCGGC-GCuACCGCcGCc -3' miRNA: 3'- -CGuCGCCGCCGCCGuCGcUGGCGcCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 115930 | 0.76 | 0.154645 |
Target: 5'- cGCGGCGGCGGgcCGGCccgccgcgugucgccGGgGACCGUGGg -3' miRNA: 3'- -CGUCGCCGCC--GCCG---------------UCgCUGGCGCCg -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 107058 | 0.75 | 0.189121 |
Target: 5'- -aGGCGGCGG-GcGCGGCG-CCGcCGGCa -3' miRNA: 3'- cgUCGCCGCCgC-CGUCGCuGGC-GCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 64800 | 0.75 | 0.176387 |
Target: 5'- cGCGGCGagcgacgccGCGGaCGGCGGCGAgC-CGGCg -3' miRNA: 3'- -CGUCGC---------CGCC-GCCGUCGCUgGcGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 36955 | 0.75 | 0.172314 |
Target: 5'- cGC-GCGGCGGCaGGCAGUcgcgcaggagGAUCGCGcGCa -3' miRNA: 3'- -CGuCGCCGCCG-CCGUCG----------CUGGCGC-CG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 70870 | 0.75 | 0.176387 |
Target: 5'- cCGGCGGCGGCaGCGGCGGCUccuCGaGCg -3' miRNA: 3'- cGUCGCCGCCGcCGUCGCUGGc--GC-CG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 126264 | 0.75 | 0.186511 |
Target: 5'- uCGGCGGCuGGCuGGCGGCGcugggcuugcugugcGCCGCGcGCc -3' miRNA: 3'- cGUCGCCG-CCG-CCGUCGC---------------UGGCGC-CG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 109168 | 0.75 | 0.180544 |
Target: 5'- gGCGaCGaGCGGCGGUAGCGGCgGaGGCa -3' miRNA: 3'- -CGUcGC-CGCCGCCGUCGCUGgCgCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 29211 | 0.75 | 0.180544 |
Target: 5'- cCGGCGGuCGGCGGCcGuCGGCCGcCGaGCa -3' miRNA: 3'- cGUCGCC-GCCGCCGuC-GCUGGC-GC-CG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 183592 | 0.75 | 0.184789 |
Target: 5'- aCGGUGGgGGCGGagGGgGGCCGCGcGCg -3' miRNA: 3'- cGUCGCCgCCGCCg-UCgCUGGCGC-CG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 145197 | 0.75 | 0.193542 |
Target: 5'- cGCcGCGGCGGCccuccGGCAGCGcuccuUCGUGGUg -3' miRNA: 3'- -CGuCGCCGCCG-----CCGUCGCu----GGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 180760 | 0.75 | 0.193542 |
Target: 5'- gGCGGCuucGGCGGCaacuguccgGGCGGUGGCCGgGGa -3' miRNA: 3'- -CGUCG---CCGCCG---------CCGUCGCUGGCgCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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