miRNA display CGI


Results 1 - 20 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 20982 1.12 0.000423
Target:  5'- gGCAGCGGCGGCGGCAGCGACCGCGGCg -3'
miRNA:   3'- -CGUCGCCGCCGCCGUCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 37893 0.94 0.008572
Target:  5'- gGCGGUGGCGGCGGCAGCGGCuCGcCGGCc -3'
miRNA:   3'- -CGUCGCCGCCGCCGUCGCUG-GC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 184579 0.93 0.009257
Target:  5'- cGCGGCGGCGGCGGCcacgcGCGGCCGCGGg -3'
miRNA:   3'- -CGUCGCCGCCGCCGu----CGCUGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 32870 0.93 0.010523
Target:  5'- cCGGCgGGCGGCGGCGGCGGCgGCGGCa -3'
miRNA:   3'- cGUCG-CCGCCGCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 116132 0.92 0.011075
Target:  5'- cGCGGCGGCGGCGGCGGCGGCCaG-GGCc -3'
miRNA:   3'- -CGUCGCCGCCGCCGUCGCUGG-CgCCG- -5'
10887 3' -64.7 NC_002794.1 + 79434 0.91 0.013591
Target:  5'- cCGGCGGCGGCGGCGGCGACCggcGCGGa -3'
miRNA:   3'- cGUCGCCGCCGCCGUCGCUGG---CGCCg -5'
10887 3' -64.7 NC_002794.1 + 55278 0.91 0.014304
Target:  5'- gGCGGCGGUGGCGGCgacgagGGCGGCgGCGGCg -3'
miRNA:   3'- -CGUCGCCGCCGCCG------UCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 179681 0.91 0.014675
Target:  5'- cGCGGCGGCgacgguGGCGGCGGCGACgGUGGCg -3'
miRNA:   3'- -CGUCGCCG------CCGCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 21657 0.9 0.016674
Target:  5'- -aAGCGGCGGCGGUGGCGGCgGCGGUa -3'
miRNA:   3'- cgUCGCCGCCGCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 82046 0.9 0.017105
Target:  5'- gGCGGCGGCGGCGGCGGCGucguCCuCGGCc -3'
miRNA:   3'- -CGUCGCCGCCGCCGUCGCu---GGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 49412 0.89 0.018466
Target:  5'- gGCGGCcGCGGCGGCGGCGGCCGUcacGGCg -3'
miRNA:   3'- -CGUCGcCGCCGCCGUCGCUGGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 142208 0.89 0.019934
Target:  5'- -aAGCGGCGGCGGCAGCGGCggugcggggaGCGGCg -3'
miRNA:   3'- cgUCGCCGCCGCCGUCGCUGg---------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 95819 0.89 0.020976
Target:  5'- aGCGGCGGCGGCcggGGgAGCGGCgGCGGCg -3'
miRNA:   3'- -CGUCGCCGCCG---CCgUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 95761 0.87 0.027747
Target:  5'- cGCGG-GGCGGCGGCcGCGACgGCGGCc -3'
miRNA:   3'- -CGUCgCCGCCGCCGuCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 120052 0.87 0.027747
Target:  5'- gGCGGCGGUGGCGGCcGCGGaggccgaCGCGGCg -3'
miRNA:   3'- -CGUCGCCGCCGCCGuCGCUg------GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 188252 0.86 0.029941
Target:  5'- gGCGGCGGCGGCGGUAGCGgcggGCCG-GGUa -3'
miRNA:   3'- -CGUCGCCGCCGCCGUCGC----UGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 107538 0.86 0.031498
Target:  5'- cGCGGCGcCGGCGGCGaCGACCGCGGUg -3'
miRNA:   3'- -CGUCGCcGCCGCCGUcGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 94473 0.86 0.031498
Target:  5'- gGCAaCGGCGGCGGCGgacGCGGCCGCGGg -3'
miRNA:   3'- -CGUcGCCGCCGCCGU---CGCUGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 37734 0.86 0.033135
Target:  5'- aGCGGCGGCgccgccGGCGGCGGCG-CgGCGGCg -3'
miRNA:   3'- -CGUCGCCG------CCGCCGUCGCuGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 91873 0.85 0.034855
Target:  5'- cCGGgGGUGGCGGCGGCGGCCGCGacgaGCa -3'
miRNA:   3'- cGUCgCCGCCGCCGUCGCUGGCGC----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.