Results 1 - 20 of 383 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 20982 | 1.12 | 0.000423 |
Target: 5'- gGCAGCGGCGGCGGCAGCGACCGCGGCg -3' miRNA: 3'- -CGUCGCCGCCGCCGUCGCUGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 37893 | 0.94 | 0.008572 |
Target: 5'- gGCGGUGGCGGCGGCAGCGGCuCGcCGGCc -3' miRNA: 3'- -CGUCGCCGCCGCCGUCGCUG-GC-GCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 184579 | 0.93 | 0.009257 |
Target: 5'- cGCGGCGGCGGCGGCcacgcGCGGCCGCGGg -3' miRNA: 3'- -CGUCGCCGCCGCCGu----CGCUGGCGCCg -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 32870 | 0.93 | 0.010523 |
Target: 5'- cCGGCgGGCGGCGGCGGCGGCgGCGGCa -3' miRNA: 3'- cGUCG-CCGCCGCCGUCGCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 116132 | 0.92 | 0.011075 |
Target: 5'- cGCGGCGGCGGCGGCGGCGGCCaG-GGCc -3' miRNA: 3'- -CGUCGCCGCCGCCGUCGCUGG-CgCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 79434 | 0.91 | 0.013591 |
Target: 5'- cCGGCGGCGGCGGCGGCGACCggcGCGGa -3' miRNA: 3'- cGUCGCCGCCGCCGUCGCUGG---CGCCg -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 55278 | 0.91 | 0.014304 |
Target: 5'- gGCGGCGGUGGCGGCgacgagGGCGGCgGCGGCg -3' miRNA: 3'- -CGUCGCCGCCGCCG------UCGCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 179681 | 0.91 | 0.014675 |
Target: 5'- cGCGGCGGCgacgguGGCGGCGGCGACgGUGGCg -3' miRNA: 3'- -CGUCGCCG------CCGCCGUCGCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 21657 | 0.9 | 0.016674 |
Target: 5'- -aAGCGGCGGCGGUGGCGGCgGCGGUa -3' miRNA: 3'- cgUCGCCGCCGCCGUCGCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 82046 | 0.9 | 0.017105 |
Target: 5'- gGCGGCGGCGGCGGCGGCGucguCCuCGGCc -3' miRNA: 3'- -CGUCGCCGCCGCCGUCGCu---GGcGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 49412 | 0.89 | 0.018466 |
Target: 5'- gGCGGCcGCGGCGGCGGCGGCCGUcacGGCg -3' miRNA: 3'- -CGUCGcCGCCGCCGUCGCUGGCG---CCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 142208 | 0.89 | 0.019934 |
Target: 5'- -aAGCGGCGGCGGCAGCGGCggugcggggaGCGGCg -3' miRNA: 3'- cgUCGCCGCCGCCGUCGCUGg---------CGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 95819 | 0.89 | 0.020976 |
Target: 5'- aGCGGCGGCGGCcggGGgAGCGGCgGCGGCg -3' miRNA: 3'- -CGUCGCCGCCG---CCgUCGCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 95761 | 0.87 | 0.027747 |
Target: 5'- cGCGG-GGCGGCGGCcGCGACgGCGGCc -3' miRNA: 3'- -CGUCgCCGCCGCCGuCGCUGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 120052 | 0.87 | 0.027747 |
Target: 5'- gGCGGCGGUGGCGGCcGCGGaggccgaCGCGGCg -3' miRNA: 3'- -CGUCGCCGCCGCCGuCGCUg------GCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 188252 | 0.86 | 0.029941 |
Target: 5'- gGCGGCGGCGGCGGUAGCGgcggGCCG-GGUa -3' miRNA: 3'- -CGUCGCCGCCGCCGUCGC----UGGCgCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 107538 | 0.86 | 0.031498 |
Target: 5'- cGCGGCGcCGGCGGCGaCGACCGCGGUg -3' miRNA: 3'- -CGUCGCcGCCGCCGUcGCUGGCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 94473 | 0.86 | 0.031498 |
Target: 5'- gGCAaCGGCGGCGGCGgacGCGGCCGCGGg -3' miRNA: 3'- -CGUcGCCGCCGCCGU---CGCUGGCGCCg -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 37734 | 0.86 | 0.033135 |
Target: 5'- aGCGGCGGCgccgccGGCGGCGGCG-CgGCGGCg -3' miRNA: 3'- -CGUCGCCG------CCGCCGUCGCuGgCGCCG- -5' |
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10887 | 3' | -64.7 | NC_002794.1 | + | 91873 | 0.85 | 0.034855 |
Target: 5'- cCGGgGGUGGCGGCGGCGGCCGCGacgaGCa -3' miRNA: 3'- cGUCgCCGCCGCCGUCGCUGGCGC----CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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