miRNA display CGI


Results 21 - 40 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 19462 0.85 0.038562
Target:  5'- aGCGGCGGCGGCGGCGG-GAcCCGcCGGUc -3'
miRNA:   3'- -CGUCGCCGCCGCCGUCgCU-GGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 192007 0.84 0.041593
Target:  5'- gGUAGCGGCGGUGGCcGCGGCUgcuguuucugugGCGGCg -3'
miRNA:   3'- -CGUCGCCGCCGCCGuCGCUGG------------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 12227 0.84 0.043742
Target:  5'- uCGGCGGCGcCGGCGGCGccguCCGCGGCg -3'
miRNA:   3'- cGUCGCCGCcGCCGUCGCu---GGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 127354 0.83 0.049476
Target:  5'- cGCucGCGGCGGCGGC-GCGGCCGCucgugucGGCg -3'
miRNA:   3'- -CGu-CGCCGCCGCCGuCGCUGGCG-------CCG- -5'
10887 3' -64.7 NC_002794.1 + 22903 0.83 0.0496
Target:  5'- ---uUGGUGGaCGGCGGCGACCGCGGCc -3'
miRNA:   3'- cgucGCCGCC-GCCGUCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 21909 0.83 0.050861
Target:  5'- uCGGUGGUGGCGGCGGagaCGACgGCGGCg -3'
miRNA:   3'- cGUCGCCGCCGCCGUC---GCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 56160 0.83 0.05442
Target:  5'- cGCAGCGGCaGCGGCcccggugcacguagAGCaccgGGCCGCGGCa -3'
miRNA:   3'- -CGUCGCCGcCGCCG--------------UCG----CUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 65928 0.82 0.05622
Target:  5'- cCGGCGGCGGUGGCGuCGGCgGCGGUa -3'
miRNA:   3'- cGUCGCCGCCGCCGUcGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 191653 0.82 0.05622
Target:  5'- aGCAGCccgccgggggacGGCGcCGGCAGCGGCgGCGGCg -3'
miRNA:   3'- -CGUCG------------CCGCcGCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 138436 0.82 0.057643
Target:  5'- aGCcGCGGUGGCGGCGGCG-CCuCGGCc -3'
miRNA:   3'- -CGuCGCCGCCGCCGUCGCuGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 58068 0.82 0.057643
Target:  5'- cCGGCGGCGGCGGgacgGGCGGCC-CGGCg -3'
miRNA:   3'- cGUCGCCGCCGCCg---UCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 186283 0.82 0.059101
Target:  5'- cGCGGCGGCaccgcggccaGGCGGcCGGUcGCCGCGGCg -3'
miRNA:   3'- -CGUCGCCG----------CCGCC-GUCGcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 129932 0.82 0.060595
Target:  5'- gGCcGUGGCGaCGGCGGCGGCgGCGGCu -3'
miRNA:   3'- -CGuCGCCGCcGCCGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 32302 0.82 0.060595
Target:  5'- cGCcGCGGCGGCcGCGcCGGCCGCGGCc -3'
miRNA:   3'- -CGuCGCCGCCGcCGUcGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 38436 0.82 0.062747
Target:  5'- -uGGCGGCGGgccggacugaggagcCGGC-GCGGCCGCGGCg -3'
miRNA:   3'- cgUCGCCGCC---------------GCCGuCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 63455 0.82 0.064812
Target:  5'- cGCGGCGGCgacgaugacgacgaGGCGGCGGcCGccgucgacgacGCCGCGGCg -3'
miRNA:   3'- -CGUCGCCG--------------CCGCCGUC-GC-----------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 106991 0.82 0.065298
Target:  5'- aCGGCGGUGGCGGCGcuggccgacGCGAcggugcucaCCGCGGCg -3'
miRNA:   3'- cGUCGCCGCCGCCGU---------CGCU---------GGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 142328 0.82 0.065298
Target:  5'- cGCAgGCGGCGGaGGCGGCGGagGCGGCg -3'
miRNA:   3'- -CGU-CGCCGCCgCCGUCGCUggCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 66740 0.81 0.066943
Target:  5'- gGCGGUGGCGGCGGCGcguaCGACCGCuGGa -3'
miRNA:   3'- -CGUCGCCGCCGCCGUc---GCUGGCG-CCg -5'
10887 3' -64.7 NC_002794.1 + 193582 0.81 0.068627
Target:  5'- cGCGcCGGUGGCGGCucaccgucguguAGCGuACCGCGGCg -3'
miRNA:   3'- -CGUcGCCGCCGCCG------------UCGC-UGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.