miRNA display CGI


Results 41 - 60 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 87351 0.81 0.070353
Target:  5'- aGCAGCGGgucCGGCGGCgAGCGGCguucugggcggCGCGGCc -3'
miRNA:   3'- -CGUCGCC---GCCGCCG-UCGCUG-----------GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 114713 0.81 0.070353
Target:  5'- aCGGaCGGCGGCGGCGGCGGCUcCGGg -3'
miRNA:   3'- cGUC-GCCGCCGCCGUCGCUGGcGCCg -5'
10887 3' -64.7 NC_002794.1 + 14495 0.81 0.070353
Target:  5'- --cGCGGCGGCGGCccGCGcUCGCGGCg -3'
miRNA:   3'- cguCGCCGCCGCCGu-CGCuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 146992 0.81 0.075595
Target:  5'- cGCcGcCGGCcgacgucGGCGGCGGCGGCCGcCGGCg -3'
miRNA:   3'- -CGuC-GCCG-------CCGCCGUCGCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 142488 0.8 0.07768
Target:  5'- cGCGuGCGGCGcCGGCAGCGA-CGUGGCg -3'
miRNA:   3'- -CGU-CGCCGCcGCCGUCGCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 108441 0.8 0.08365
Target:  5'- cCGGCGGCacucGCGGCGGCGGCCcGcCGGCa -3'
miRNA:   3'- cGUCGCCGc---CGCCGUCGCUGG-C-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 126385 0.8 0.08365
Target:  5'- cGCcGgGGCcugcGCGGCGGCGugCGCGGCg -3'
miRNA:   3'- -CGuCgCCGc---CGCCGUCGCugGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 194138 0.8 0.085735
Target:  5'- gGCAGCGGCcGCaGCAGCGcCCGCGaGCc -3'
miRNA:   3'- -CGUCGCCGcCGcCGUCGCuGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 54987 0.79 0.092292
Target:  5'- cGCcGCGGCGaCGGCGGCGACuCGCcgGGCg -3'
miRNA:   3'- -CGuCGCCGCcGCCGUCGCUG-GCG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 65235 0.79 0.092292
Target:  5'- gGCGGCGGuCGccGCGGCGGCGAUC-CGGCc -3'
miRNA:   3'- -CGUCGCC-GC--CGCCGUCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 107884 0.79 0.101777
Target:  5'- gGCGGC-GCGGCGGguGCGGCUGcCGGg -3'
miRNA:   3'- -CGUCGcCGCCGCCguCGCUGGC-GCCg -5'
10887 3' -64.7 NC_002794.1 + 156399 0.79 0.101777
Target:  5'- -gAGCGGcCGGC-GCcGCGGCCGCGGCc -3'
miRNA:   3'- cgUCGCC-GCCGcCGuCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 62067 0.79 0.101777
Target:  5'- cCGGCGGCGacgcCGGCGGCGACgacggcgaCGCGGCg -3'
miRNA:   3'- cGUCGCCGCc---GCCGUCGCUG--------GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 55402 0.79 0.104288
Target:  5'- -aGGCGGCcgaGGCGGCcgaGGCGACCcCGGCg -3'
miRNA:   3'- cgUCGCCG---CCGCCG---UCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 99596 0.78 0.106857
Target:  5'- cGCGGCGGCGGCGcGCGcucGCG-CCGCcucGGCc -3'
miRNA:   3'- -CGUCGCCGCCGC-CGU---CGCuGGCG---CCG- -5'
10887 3' -64.7 NC_002794.1 + 67018 0.78 0.106857
Target:  5'- cCGGCGGCGGCGGcCGGCucCCGCcGCg -3'
miRNA:   3'- cGUCGCCGCCGCC-GUCGcuGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 115052 0.78 0.108691
Target:  5'- -gGGCGGCgGGCGGCAGCGccguccaguccacgGCCuCGGCg -3'
miRNA:   3'- cgUCGCCG-CCGCCGUCGC--------------UGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 94047 0.78 0.109485
Target:  5'- -gAGCGGCGGCGGU-GCGGggGCGGCg -3'
miRNA:   3'- cgUCGCCGCCGCCGuCGCUggCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 56303 0.78 0.112174
Target:  5'- cGCGcGCGGUcGCGGUcgcuGGCGGCCGUGGCc -3'
miRNA:   3'- -CGU-CGCCGcCGCCG----UCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 119433 0.78 0.112174
Target:  5'- cGCAGguccgaCGGCGGCGGCGGUGGCgGCGuCg -3'
miRNA:   3'- -CGUC------GCCGCCGCCGUCGCUGgCGCcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.