miRNA display CGI


Results 61 - 80 of 383 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 119433 0.78 0.112174
Target:  5'- cGCAGguccgaCGGCGGCGGCGGUGGCgGCGuCg -3'
miRNA:   3'- -CGUC------GCCGCCGCCGUCGCUGgCGCcG- -5'
10887 3' -64.7 NC_002794.1 + 91225 0.78 0.114925
Target:  5'- aCGGCGGaCGGC-GCGGCGGCCGUcgGGCu -3'
miRNA:   3'- cGUCGCC-GCCGcCGUCGCUGGCG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 182516 0.78 0.116043
Target:  5'- cGUAGCGGagcaccguccaccaGcGCGGCAGCGacugcGCCGCGGCc -3'
miRNA:   3'- -CGUCGCCg-------------C-CGCCGUCGC-----UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 113164 0.78 0.117739
Target:  5'- uGUAGCGcGCgcgGGCGGCGGCGGUCGCGGa -3'
miRNA:   3'- -CGUCGC-CG---CCGCCGUCGCUGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 55357 0.78 0.120617
Target:  5'- -aGGCGGCcgaGGCGGCcgaGGCGGCCGaGGCg -3'
miRNA:   3'- cgUCGCCG---CCGCCG---UCGCUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 103587 0.78 0.120617
Target:  5'- aGCAGCGGUcgGGCaGGCAGCGGCgGCacGCg -3'
miRNA:   3'- -CGUCGCCG--CCG-CCGUCGCUGgCGc-CG- -5'
10887 3' -64.7 NC_002794.1 + 142386 0.78 0.123559
Target:  5'- aGCGGCGGagaCGGCGGUgcaGGCGGCgucgGCGGCg -3'
miRNA:   3'- -CGUCGCC---GCCGCCG---UCGCUGg---CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 92253 0.77 0.126569
Target:  5'- uCGGCGGCgucgcuGGCGGCGGCG-CCG-GGCg -3'
miRNA:   3'- cGUCGCCG------CCGCCGUCGCuGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 62492 0.77 0.129646
Target:  5'- cGCgAGUGGaCGGCgGGCGGCG-CCGcCGGCg -3'
miRNA:   3'- -CG-UCGCC-GCCG-CCGUCGCuGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 114194 0.77 0.129646
Target:  5'- cGCAGCGGCGccaCGGcCGGCGucuCCGgCGGCa -3'
miRNA:   3'- -CGUCGCCGCc--GCC-GUCGCu--GGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 101255 0.77 0.129646
Target:  5'- cGCAGCGGggggccgccccCGGCGcCGGUGGCgGCGGCg -3'
miRNA:   3'- -CGUCGCC-----------GCCGCcGUCGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 184043 0.77 0.132792
Target:  5'- cGCAGCGcGCGGUcGCGG--GCCGCGGCg -3'
miRNA:   3'- -CGUCGC-CGCCGcCGUCgcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 125532 0.77 0.135684
Target:  5'- cGCGGCGaacgagcGCGGCGGCAGCGGuuuCUuCGGCg -3'
miRNA:   3'- -CGUCGC-------CGCCGCCGUCGCU---GGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 110246 0.77 0.139297
Target:  5'- cGCGGCGGagguuuccCGcGCGGCGucGCGACgGCGGCc -3'
miRNA:   3'- -CGUCGCC--------GC-CGCCGU--CGCUGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 66867 0.77 0.139297
Target:  5'- gGCcGCGGCGuGCGGCugAGCcAUCGCGGCc -3'
miRNA:   3'- -CGuCGCCGC-CGCCG--UCGcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 118272 0.77 0.142658
Target:  5'- gGCGGCGGCGcCGGCgucGGgGACCGCgccgGGCg -3'
miRNA:   3'- -CGUCGCCGCcGCCG---UCgCUGGCG----CCG- -5'
10887 3' -64.7 NC_002794.1 + 72422 0.76 0.146092
Target:  5'- cGCGGCGGaggaggagcCGGCGG-AGgGACCGgCGGCg -3'
miRNA:   3'- -CGUCGCC---------GCCGCCgUCgCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 105905 0.76 0.146092
Target:  5'- cGCcGCGGCGGCGGC-GCuACCGCcGCc -3'
miRNA:   3'- -CGuCGCCGCCGCCGuCGcUGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 46314 0.76 0.146092
Target:  5'- aGC-GCGGCGGCGaCGGCGccgucGCCGCGGa -3'
miRNA:   3'- -CGuCGCCGCCGCcGUCGC-----UGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 93021 0.76 0.146092
Target:  5'- uGCAGCGGCGGaaccCGGUGcGCGGCUGCcuGGCc -3'
miRNA:   3'- -CGUCGCCGCC----GCCGU-CGCUGGCG--CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.