miRNA display CGI


Results 81 - 100 of 383 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 105905 0.76 0.146092
Target:  5'- cGCcGCGGCGGCGGC-GCuACCGCcGCc -3'
miRNA:   3'- -CGuCGCCGCCGCCGuCGcUGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 31053 0.76 0.148541
Target:  5'- gGCAGCGGCacGGCGGcCAGCucgcgcagcacgucGAgCGUGGCg -3'
miRNA:   3'- -CGUCGCCG--CCGCC-GUCG--------------CUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 61522 0.76 0.153189
Target:  5'- aCGGCGGCcgccGGCGGCcgccGCGaagacgacgccGCCGCGGCg -3'
miRNA:   3'- cGUCGCCG----CCGCCGu---CGC-----------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 141429 0.76 0.154645
Target:  5'- -gGGCGGCGGgGGCgccgggggcgccgggAGCGG-CGCGGCg -3'
miRNA:   3'- cgUCGCCGCCgCCG---------------UCGCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 115930 0.76 0.154645
Target:  5'- cGCGGCGGCGGgcCGGCccgccgcgugucgccGGgGACCGUGGg -3'
miRNA:   3'- -CGUCGCCGCC--GCCG---------------UCgCUGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 190735 0.76 0.159465
Target:  5'- cGCAGCGcccgccgccgucucGaCGGgGGCGGCGGCCGCGcGUc -3'
miRNA:   3'- -CGUCGC--------------C-GCCgCCGUCGCUGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 142152 0.76 0.160219
Target:  5'- gGCGGaGGCGGCGGUAGC-ACCGgcagcguCGGCa -3'
miRNA:   3'- -CGUCgCCGCCGCCGUCGcUGGC-------GCCG- -5'
10887 3' -64.7 NC_002794.1 + 154377 0.76 0.160597
Target:  5'- cGCGGCGGCGGCgGGCAcgcccguucGCGugguGCCgGUGGCc -3'
miRNA:   3'- -CGUCGCCGCCG-CCGU---------CGC----UGG-CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 8118 0.76 0.168326
Target:  5'- -gAGCgGGCGGCGGCcuccucGGUGACCGgcgaCGGCa -3'
miRNA:   3'- cgUCG-CCGCCGCCG------UCGCUGGC----GCCG- -5'
10887 3' -64.7 NC_002794.1 + 36914 0.76 0.168326
Target:  5'- --cGCGGCGcCGGCcccGCGACCGCGGa -3'
miRNA:   3'- cguCGCCGCcGCCGu--CGCUGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 110628 0.75 0.172314
Target:  5'- cGCGGCGccGCGGCGGCGGgGucggguuucuCCGgCGGCu -3'
miRNA:   3'- -CGUCGC--CGCCGCCGUCgCu---------GGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 36955 0.75 0.172314
Target:  5'- cGC-GCGGCGGCaGGCAGUcgcgcaggagGAUCGCGcGCa -3'
miRNA:   3'- -CGuCGCCGCCG-CCGUCG----------CUGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 64800 0.75 0.176387
Target:  5'- cGCGGCGagcgacgccGCGGaCGGCGGCGAgC-CGGCg -3'
miRNA:   3'- -CGUCGC---------CGCC-GCCGUCGCUgGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 70870 0.75 0.176387
Target:  5'- cCGGCGGCGGCaGCGGCGGCUccuCGaGCg -3'
miRNA:   3'- cGUCGCCGCCGcCGUCGCUGGc--GC-CG- -5'
10887 3' -64.7 NC_002794.1 + 29211 0.75 0.180544
Target:  5'- cCGGCGGuCGGCGGCcGuCGGCCGcCGaGCa -3'
miRNA:   3'- cGUCGCC-GCCGCCGuC-GCUGGC-GC-CG- -5'
10887 3' -64.7 NC_002794.1 + 109168 0.75 0.180544
Target:  5'- gGCGaCGaGCGGCGGUAGCGGCgGaGGCa -3'
miRNA:   3'- -CGUcGC-CGCCGCCGUCGCUGgCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 183592 0.75 0.184789
Target:  5'- aCGGUGGgGGCGGagGGgGGCCGCGcGCg -3'
miRNA:   3'- cGUCGCCgCCGCCg-UCgCUGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 126264 0.75 0.186511
Target:  5'- uCGGCGGCuGGCuGGCGGCGcugggcuugcugugcGCCGCGcGCc -3'
miRNA:   3'- cGUCGCCG-CCG-CCGUCGC---------------UGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 107058 0.75 0.189121
Target:  5'- -aGGCGGCGG-GcGCGGCG-CCGcCGGCa -3'
miRNA:   3'- cgUCGCCGCCgC-CGUCGCuGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 145738 0.75 0.193542
Target:  5'- gGCGGCGGCGcCGGCaucgacGGCGACCccgaGCGaGCg -3'
miRNA:   3'- -CGUCGCCGCcGCCG------UCGCUGG----CGC-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.