miRNA display CGI


Results 101 - 120 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 191875 0.75 0.193542
Target:  5'- gGCGGCGGaGGgGGCGGCGGagGCGGg -3'
miRNA:   3'- -CGUCGCCgCCgCCGUCGCUggCGCCg -5'
10887 3' -64.7 NC_002794.1 + 180760 0.75 0.193542
Target:  5'- gGCGGCuucGGCGGCaacuguccgGGCGGUGGCCGgGGa -3'
miRNA:   3'- -CGUCG---CCGCCG---------CCGUCGCUGGCgCCg -5'
10887 3' -64.7 NC_002794.1 + 145738 0.75 0.193542
Target:  5'- gGCGGCGGCGcCGGCaucgacGGCGACCccgaGCGaGCg -3'
miRNA:   3'- -CGUCGCCGCcGCCG------UCGCUGG----CGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 94006 0.74 0.198054
Target:  5'- gGCGcCGGCGGCGGgcCGGCGGguuCCGcCGGCg -3'
miRNA:   3'- -CGUcGCCGCCGCC--GUCGCU---GGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 50586 0.74 0.198054
Target:  5'- cGCGGCGGCugGGUGGcCGGCG-CCGgGGg -3'
miRNA:   3'- -CGUCGCCG--CCGCC-GUCGCuGGCgCCg -5'
10887 3' -64.7 NC_002794.1 + 116949 0.74 0.198054
Target:  5'- cCGGCGGCGGCGuCGGCGGgCGCaGGa -3'
miRNA:   3'- cGUCGCCGCCGCcGUCGCUgGCG-CCg -5'
10887 3' -64.7 NC_002794.1 + 92322 0.74 0.202657
Target:  5'- gGCGGCGGgGGCccgGGCgGGCGGCU-CGGCg -3'
miRNA:   3'- -CGUCGCCgCCG---CCG-UCGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 50769 0.74 0.202657
Target:  5'- gGCGGCGGCGaCGGC-GCGuCUcggGCGGCg -3'
miRNA:   3'- -CGUCGCCGCcGCCGuCGCuGG---CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 95857 0.74 0.202657
Target:  5'- -aGGCGGCgGGCGGgccguuucagugUGGCGACCcgGCGGCg -3'
miRNA:   3'- cgUCGCCG-CCGCC------------GUCGCUGG--CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 77994 0.74 0.207353
Target:  5'- aCGGCGGgcguuguucCGGCGGCGGCG-CCGuCGGg -3'
miRNA:   3'- cGUCGCC---------GCCGCCGUCGCuGGC-GCCg -5'
10887 3' -64.7 NC_002794.1 + 112327 0.74 0.207353
Target:  5'- aCGGCGGggagcgcgcCGGcCGGCGGCGcCgGCGGCg -3'
miRNA:   3'- cGUCGCC---------GCC-GCCGUCGCuGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 125737 0.74 0.207353
Target:  5'- -aGGCGGaGGCGGgccgcgggaCGGCGGCCGgCGGCu -3'
miRNA:   3'- cgUCGCCgCCGCC---------GUCGCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 89673 0.74 0.207353
Target:  5'- cGC-GCGGCGGUGGgAGgGcuguUCGCGGCg -3'
miRNA:   3'- -CGuCGCCGCCGCCgUCgCu---GGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 142358 0.74 0.207353
Target:  5'- -aGGCGGCGGaGGCGGCGGagGCGGa -3'
miRNA:   3'- cgUCGCCGCCgCCGUCGCUggCGCCg -5'
10887 3' -64.7 NC_002794.1 + 84293 0.74 0.211659
Target:  5'- aCGGgGaGCGGCGGCgcuuccuGGCGACCG-GGCc -3'
miRNA:   3'- cGUCgC-CGCCGCCG-------UCGCUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 111628 0.74 0.211659
Target:  5'- cGCcGCGGCcgccgccGGUcgGGCGccGCGGCCGCGGCc -3'
miRNA:   3'- -CGuCGCCG-------CCG--CCGU--CGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 75374 0.74 0.212142
Target:  5'- cGCcGCGGcCGGCGGCGGCGGCCu---- -3'
miRNA:   3'- -CGuCGCC-GCCGCCGUCGCUGGcgccg -5'
10887 3' -64.7 NC_002794.1 + 70658 0.74 0.212142
Target:  5'- -uGGCcucGUGcGCGGCGGCcGCCGCGGCg -3'
miRNA:   3'- cgUCGc--CGC-CGCCGUCGcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 23917 0.74 0.212142
Target:  5'- aGCAGCGuG-GGCGaGCgAGCGauccgagcccgGCCGCGGCg -3'
miRNA:   3'- -CGUCGC-CgCCGC-CG-UCGC-----------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 185434 0.74 0.216042
Target:  5'- cGCGGCGccauGCGcggacaggucuccGCgacaaacgccgcgGGCGGCGGCCGCGGCg -3'
miRNA:   3'- -CGUCGC----CGC-------------CG-------------CCGUCGCUGGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.