miRNA display CGI


Results 121 - 140 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 108394 0.74 0.217026
Target:  5'- -gAGCGGaggcucCGGCGGCGGCGcccACCaCGGCg -3'
miRNA:   3'- cgUCGCC------GCCGCCGUCGC---UGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 141334 0.74 0.217026
Target:  5'- uCGGUGGCGaGCGaagacgagaGCAGCGACgagaGCGGCg -3'
miRNA:   3'- cGUCGCCGC-CGC---------CGUCGCUGg---CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 14679 0.74 0.219007
Target:  5'- cGCGGCGGCGGUcgcgcugcuccugacGGCguggggAGCGcuGCuCGCGGCu -3'
miRNA:   3'- -CGUCGCCGCCG---------------CCG------UCGC--UG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 51059 0.74 0.221504
Target:  5'- -gAGaCGGCGGCGaCGGCGACCuccgagcGUGGCg -3'
miRNA:   3'- cgUC-GCCGCCGCcGUCGCUGG-------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 65998 0.74 0.227083
Target:  5'- -gGGCGGUGauccCGGCaccgaGGCGGCCGCGGUc -3'
miRNA:   3'- cgUCGCCGCc---GCCG-----UCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 113646 0.73 0.232258
Target:  5'- aGCAGCGGCccGGCGuccuCGGCGuCCagcGCGGCg -3'
miRNA:   3'- -CGUCGCCG--CCGCc---GUCGCuGG---CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 100824 0.73 0.232258
Target:  5'- -gGGCGGCGGgGGcCGGCaGCCG-GGCu -3'
miRNA:   3'- cgUCGCCGCCgCC-GUCGcUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 188344 0.73 0.234356
Target:  5'- gGCGGCGccgucgcgcccgucCGGcCGGCGGCGGCCGagGGCg -3'
miRNA:   3'- -CGUCGCc-------------GCC-GCCGUCGCUGGCg-CCG- -5'
10887 3' -64.7 NC_002794.1 + 143065 0.73 0.235411
Target:  5'- cGUAGCGcccGCGGCGGCAGaCGuaguggagguugCGCGGCg -3'
miRNA:   3'- -CGUCGC---CGCCGCCGUC-GCug----------GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 49016 0.73 0.237532
Target:  5'- cGCcGCGGCGGCcGCGGCGucguccGgCGCGGUc -3'
miRNA:   3'- -CGuCGCCGCCGcCGUCGC------UgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 193745 0.73 0.237532
Target:  5'- --cGCGGCuuCGGCgAGCGACCGcCGGCc -3'
miRNA:   3'- cguCGCCGccGCCG-UCGCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 32577 0.73 0.237532
Target:  5'- cGCGcGCGGCGGUgccggGGCcGgGGCCGgGGCc -3'
miRNA:   3'- -CGU-CGCCGCCG-----CCGuCgCUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 113093 0.73 0.237532
Target:  5'- gGCGaaCGGCGGCGGCAGCucCUGCaccuGGCg -3'
miRNA:   3'- -CGUc-GCCGCCGCCGUCGcuGGCG----CCG- -5'
10887 3' -64.7 NC_002794.1 + 147694 0.73 0.242906
Target:  5'- cCGGCGGCGauGCGGCGcacguGCGccaguACCGCGGUc -3'
miRNA:   3'- cGUCGCCGC--CGCCGU-----CGC-----UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 106386 0.73 0.245084
Target:  5'- gGCAGaCGGCGGgCgaacggucggaccccGGCGGCG-CCGgGGCu -3'
miRNA:   3'- -CGUC-GCCGCC-G---------------CCGUCGCuGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 185183 0.73 0.248381
Target:  5'- cGCGGuCGGC-GCGGuCGGCGcggucAUCGCGGCu -3'
miRNA:   3'- -CGUC-GCCGcCGCC-GUCGC-----UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 100453 0.73 0.248381
Target:  5'- -gAGCGGCGGCGGC-GCcuucCCGgUGGCg -3'
miRNA:   3'- cgUCGCCGCCGCCGuCGcu--GGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 120992 0.73 0.248381
Target:  5'- uGUAGCGGCGGCgGGCcaUGGCCGaggguCGGCc -3'
miRNA:   3'- -CGUCGCCGCCG-CCGucGCUGGC-----GCCG- -5'
10887 3' -64.7 NC_002794.1 + 113861 0.73 0.253957
Target:  5'- uGCAGUuccGGCcaGGCGcGCu-CGGCCGCGGCg -3'
miRNA:   3'- -CGUCG---CCG--CCGC-CGucGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 67411 0.73 0.253957
Target:  5'- cCAGCGuCGGCGcCAGCGuCgGCGGCg -3'
miRNA:   3'- cGUCGCcGCCGCcGUCGCuGgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.