Results 41 - 60 of 383 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 145116 | 0.66 | 0.569115 |
Target: 5'- cGCGGUGuCGG-GGCAGCucauGCUGCGGg -3' miRNA: 3'- -CGUCGCcGCCgCCGUCGc---UGGCGCCg -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 112544 | 0.66 | 0.569115 |
Target: 5'- aGUAGCGGUaGCGG-GGCucGCCGcCGGCc -3' miRNA: 3'- -CGUCGCCGcCGCCgUCGc-UGGC-GCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 3763 | 0.66 | 0.569115 |
Target: 5'- gGCGG-GGCGGgGG-AGUGACUcaGCGGg -3' miRNA: 3'- -CGUCgCCGCCgCCgUCGCUGG--CGCCg -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 184813 | 0.66 | 0.569115 |
Target: 5'- aGCAGCGucaCGG-GGCAcGCGuCCG-GGCg -3' miRNA: 3'- -CGUCGCc--GCCgCCGU-CGCuGGCgCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 108312 | 0.66 | 0.569115 |
Target: 5'- uGCGcCGGCGGUGGgucuuG-GACgGCGGCg -3' miRNA: 3'- -CGUcGCCGCCGCCgu---CgCUGgCGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 101511 | 0.66 | 0.569115 |
Target: 5'- cGguGCGGCacacGcCGGCGGgGugCcCGGCg -3' miRNA: 3'- -CguCGCCGc---C-GCCGUCgCugGcGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 184481 | 0.66 | 0.569115 |
Target: 5'- aCGGCGcGCGG-GGCcccggacgcccgGGCGGCgcgggccccgcgCGCGGCg -3' miRNA: 3'- cGUCGC-CGCCgCCG------------UCGCUG------------GCGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 21879 | 0.67 | 0.559795 |
Target: 5'- -aGGcCGGCcGCGG-GGUGuCCGCGGCc -3' miRNA: 3'- cgUC-GCCGcCGCCgUCGCuGGCGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 266 | 0.67 | 0.559795 |
Target: 5'- cGC-GCGcGCGGacgcgaGGaCGGCGGCCcUGGCg -3' miRNA: 3'- -CGuCGC-CGCCg-----CC-GUCGCUGGcGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 126609 | 0.67 | 0.559795 |
Target: 5'- -aGGcCGGCGccgacgucGCGGCGugagcGCGACCG-GGCg -3' miRNA: 3'- cgUC-GCCGC--------CGCCGU-----CGCUGGCgCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 150399 | 0.67 | 0.559795 |
Target: 5'- cGCccUGGuuGCGGCAGaaGCCGUGGCc -3' miRNA: 3'- -CGucGCCgcCGCCGUCgcUGGCGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 58755 | 0.67 | 0.559795 |
Target: 5'- gGCAGCuGGCGGaGG-AGCcGCUGCuGGCc -3' miRNA: 3'- -CGUCG-CCGCCgCCgUCGcUGGCG-CCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 102947 | 0.67 | 0.559795 |
Target: 5'- cCGGUGGaagaagaGGUGuGUgaaAGCGAgCGCGGCg -3' miRNA: 3'- cGUCGCCg------CCGC-CG---UCGCUgGCGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 187222 | 0.67 | 0.558865 |
Target: 5'- cCAGCGGCuccggcuGGCcGCAGCacaGAuaGCGGCu -3' miRNA: 3'- cGUCGCCG-------CCGcCGUCG---CUggCGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 53273 | 0.67 | 0.557007 |
Target: 5'- aCAaCGG-GGCGGCgAGCGACCacuccaggugccgaGCGGUc -3' miRNA: 3'- cGUcGCCgCCGCCG-UCGCUGG--------------CGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 185552 | 0.67 | 0.557007 |
Target: 5'- cCGGCcGCGcgccccgcccugccGCGGCAG-GGCgCGCGGCu -3' miRNA: 3'- cGUCGcCGC--------------CGCCGUCgCUG-GCGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 146327 | 0.67 | 0.554223 |
Target: 5'- cGC-GCGGCGGauuCGaccccgucgucgaucGCGGCGGCCGCccgGGUa -3' miRNA: 3'- -CGuCGCCGCC---GC---------------CGUCGCUGGCG---CCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 116907 | 0.67 | 0.550518 |
Target: 5'- cCGGCGGcCGGUccGGCGuCGGCUcCGGCg -3' miRNA: 3'- cGUCGCC-GCCG--CCGUcGCUGGcGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 49600 | 0.67 | 0.550518 |
Target: 5'- cGCGauCGGCGaCGGCgGGCGcCgGCGGCg -3' miRNA: 3'- -CGUc-GCCGCcGCCG-UCGCuGgCGCCG- -5' |
|||||||
10887 | 3' | -64.7 | NC_002794.1 | + | 187499 | 0.67 | 0.550518 |
Target: 5'- gGCcGC-GCaGGCGGCcagGGCGcCCGCGGa -3' miRNA: 3'- -CGuCGcCG-CCGCCG---UCGCuGGCGCCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home