miRNA display CGI


Results 61 - 80 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 187499 0.67 0.550518
Target:  5'- gGCcGC-GCaGGCGGCcagGGCGcCCGCGGa -3'
miRNA:   3'- -CGuCGcCG-CCGCCG---UCGCuGGCGCCg -5'
10887 3' -64.7 NC_002794.1 + 49600 0.67 0.550518
Target:  5'- cGCGauCGGCGaCGGCgGGCGcCgGCGGCg -3'
miRNA:   3'- -CGUc-GCCGCcGCCG-UCGCuGgCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 116907 0.67 0.550518
Target:  5'- cCGGCGGcCGGUccGGCGuCGGCUcCGGCg -3'
miRNA:   3'- cGUCGCC-GCCG--CCGUcGCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 143280 0.67 0.550518
Target:  5'- gGCGcCGGCcgcucggggucgGGCGGguGC-AgCGCGGCg -3'
miRNA:   3'- -CGUcGCCG------------CCGCCguCGcUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 47342 0.67 0.548667
Target:  5'- --cGCGGCGGCGGCcuccggacguucGCGcucaaGCCGaGGCc -3'
miRNA:   3'- cguCGCCGCCGCCGu-----------CGC-----UGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 36006 0.67 0.541288
Target:  5'- cGCGG-GGCucgGGCGGCGGaauccgccgucCGGCC-CGGCc -3'
miRNA:   3'- -CGUCgCCG---CCGCCGUC-----------GCUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 117194 0.67 0.541288
Target:  5'- cGCAGauCGGCgucgggcccgGGCGGCucCGGCCGCgucagGGCg -3'
miRNA:   3'- -CGUC--GCCG----------CCGCCGucGCUGGCG-----CCG- -5'
10887 3' -64.7 NC_002794.1 + 66627 0.67 0.541288
Target:  5'- -aGGCGGUGGCGGgAGgaGGuCCGUccgggGGCa -3'
miRNA:   3'- cgUCGCCGCCGCCgUCg-CU-GGCG-----CCG- -5'
10887 3' -64.7 NC_002794.1 + 91738 0.67 0.541288
Target:  5'- uCGGCGGCcaacaaggugccGGCgGGCGGC-ACCGC-GCa -3'
miRNA:   3'- cGUCGCCG------------CCG-CCGUCGcUGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 89730 0.67 0.541288
Target:  5'- cGC-GCGGCGuCGGUccuuGGgGAUuCGCGGCg -3'
miRNA:   3'- -CGuCGCCGCcGCCG----UCgCUG-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 192986 0.67 0.541288
Target:  5'- gGC-GCGGUcgcccucgcccGGCGuguGCAGCG-CCaGCGGCg -3'
miRNA:   3'- -CGuCGCCG-----------CCGC---CGUCGCuGG-CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 41287 0.67 0.532111
Target:  5'- ---aCGGCGGCGGCuccgacGCGgGCCGCGuGg -3'
miRNA:   3'- cgucGCCGCCGCCGu-----CGC-UGGCGC-Cg -5'
10887 3' -64.7 NC_002794.1 + 37330 0.67 0.532111
Target:  5'- aGCGGUGGggcccgGGCGGCAGCaGGUCG-GGCc -3'
miRNA:   3'- -CGUCGCCg-----CCGCCGUCG-CUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 70043 0.67 0.531196
Target:  5'- aGCAGCacguaggucgcccGGUcgGGCGGCcGCaGCCGCaGCa -3'
miRNA:   3'- -CGUCG-------------CCG--CCGCCGuCGcUGGCGcCG- -5'
10887 3' -64.7 NC_002794.1 + 149287 0.67 0.526631
Target:  5'- cGCGGCGGCucgcucacggggGGCGGguGUagguagggcaagucgGACCGgaccgaacCGGCc -3'
miRNA:   3'- -CGUCGCCG------------CCGCCguCG---------------CUGGC--------GCCG- -5'
10887 3' -64.7 NC_002794.1 + 134134 0.67 0.526631
Target:  5'- cGCGGCGaGC-GCGGaAGCucgguccguguugcuGGCCGUGGCc -3'
miRNA:   3'- -CGUCGC-CGcCGCCgUCG---------------CUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 194923 0.67 0.52299
Target:  5'- aGCAGCGGCcGCacCAGCu-CCGaCGGCg -3'
miRNA:   3'- -CGUCGCCGcCGccGUCGcuGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 34083 0.67 0.52299
Target:  5'- cCGGCGGCcgGGCagccgucgGGCGGCccgGACCGCGa- -3'
miRNA:   3'- cGUCGCCG--CCG--------CCGUCG---CUGGCGCcg -5'
10887 3' -64.7 NC_002794.1 + 34747 0.67 0.52299
Target:  5'- aGCGcGCGaCGGC-GCGGUGGgaCGCGGCa -3'
miRNA:   3'- -CGU-CGCcGCCGcCGUCGCUg-GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 4246 0.67 0.522082
Target:  5'- cGguGCGGCucucGGUGGUcucgaucGGUGACgGUGGUc -3'
miRNA:   3'- -CguCGCCG----CCGCCG-------UCGCUGgCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.