miRNA display CGI


Results 81 - 100 of 383 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 183205 0.67 0.520266
Target:  5'- aCGcCGGCGGCGcGUucgucgccAGCGACCaggcgacccgacacGCGGCg -3'
miRNA:   3'- cGUcGCCGCCGC-CG--------UCGCUGG--------------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 9314 0.67 0.517547
Target:  5'- aCGGCGG-GaaagaggaaggaaacGCGGguGCGugCGcCGGCa -3'
miRNA:   3'- cGUCGCCgC---------------CGCCguCGCugGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 44245 0.67 0.513931
Target:  5'- -gGGCGGCucggugccgGGCGGCu-CGGCCGcCGGg -3'
miRNA:   3'- cgUCGCCG---------CCGCCGucGCUGGC-GCCg -5'
10887 3' -64.7 NC_002794.1 + 42641 0.67 0.513931
Target:  5'- aCAGCGGagucGCGGCcgaagccgacGGCG-CCGcCGGCa -3'
miRNA:   3'- cGUCGCCgc--CGCCG----------UCGCuGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 156458 0.67 0.513931
Target:  5'- gGCGGUugguuaGGgGGCGGgGGaCGACgggGCGGCu -3'
miRNA:   3'- -CGUCG------CCgCCGCCgUC-GCUGg--CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 100365 0.68 0.504935
Target:  5'- -aGGUGGacugcgaGGUGGCcGaCGuCCGCGGCg -3'
miRNA:   3'- cgUCGCCg------CCGCCGuC-GCuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 116845 0.68 0.504935
Target:  5'- cGC-GCGGUGGaucuucauGCGGCGGCCGUGucGCg -3'
miRNA:   3'- -CGuCGCCGCCgc------CGUCGCUGGCGC--CG- -5'
10887 3' -64.7 NC_002794.1 + 146616 0.68 0.504935
Target:  5'- -aGGCGGCgaggacgucgaaGGCGGUAcCGGgaGCGGCg -3'
miRNA:   3'- cgUCGCCG------------CCGCCGUcGCUggCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 16276 0.68 0.504935
Target:  5'- cGCcGCGccccuguUGGCGGagucuagccuGGCGGCCGCGGCc -3'
miRNA:   3'- -CGuCGCc------GCCGCCg---------UCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 48160 0.68 0.496009
Target:  5'- gGCAGCGGCGccgcuucacgccGCuGCAGCGgaACUGCGcCa -3'
miRNA:   3'- -CGUCGCCGC------------CGcCGUCGC--UGGCGCcG- -5'
10887 3' -64.7 NC_002794.1 + 113589 0.68 0.496009
Target:  5'- uGCAcGaCGGC-GCGGaguuucucCAGCG-CCGCGGCc -3'
miRNA:   3'- -CGU-C-GCCGcCGCC--------GUCGCuGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 137948 0.68 0.496009
Target:  5'- gGCAGCGGCGGauGCGuucGCCGaGGCc -3'
miRNA:   3'- -CGUCGCCGCCgcCGUcgcUGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 125015 0.68 0.496009
Target:  5'- aGCGGUccGCGGCGGCcGUcACCaCGGCg -3'
miRNA:   3'- -CGUCGc-CGCCGCCGuCGcUGGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 71233 0.68 0.496009
Target:  5'- cGUAGUGGCGGcCGGC-GUGGaC-CGGCa -3'
miRNA:   3'- -CGUCGCCGCC-GCCGuCGCUgGcGCCG- -5'
10887 3' -64.7 NC_002794.1 + 44171 0.68 0.496009
Target:  5'- gGC-GCGaGCGGCGGCucgucgacuccgGGCGaaGCCG-GGCc -3'
miRNA:   3'- -CGuCGC-CGCCGCCG------------UCGC--UGGCgCCG- -5'
10887 3' -64.7 NC_002794.1 + 145394 0.68 0.49512
Target:  5'- uCGGUGGCGcGCcGC-GCGGCCuuaaagcGCGGCg -3'
miRNA:   3'- cGUCGCCGC-CGcCGuCGCUGG-------CGCCG- -5'
10887 3' -64.7 NC_002794.1 + 111126 0.68 0.487155
Target:  5'- aCGGCGcCGGCGGcCGGUGcuccaCGCGGUa -3'
miRNA:   3'- cGUCGCcGCCGCC-GUCGCug---GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 189840 0.68 0.487155
Target:  5'- aCAGCGGgGucuCGGCcGCGgaGCCGuCGGCg -3'
miRNA:   3'- cGUCGCCgCc--GCCGuCGC--UGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 120083 0.68 0.487155
Target:  5'- nCGGUGGCGGCGacgaccguGCcgAGCGcGCCGCGcGUg -3'
miRNA:   3'- cGUCGCCGCCGC--------CG--UCGC-UGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 122201 0.68 0.487155
Target:  5'- cGCGGCGaaGCGGUGcCGGCG-CCgcuacgauaaGCGGCg -3'
miRNA:   3'- -CGUCGC--CGCCGCcGUCGCuGG----------CGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.