miRNA display CGI


Results 101 - 120 of 383 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10887 3' -64.7 NC_002794.1 + 111126 0.68 0.487155
Target:  5'- aCGGCGcCGGCGGcCGGUGcuccaCGCGGUa -3'
miRNA:   3'- cGUCGCcGCCGCC-GUCGCug---GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 38150 0.68 0.478376
Target:  5'- aGCAGgaGGUaGGCGaGCAgGCGGCUGCgcucGGCg -3'
miRNA:   3'- -CGUCg-CCG-CCGC-CGU-CGCUGGCG----CCG- -5'
10887 3' -64.7 NC_002794.1 + 37965 0.68 0.478376
Target:  5'- uCGGCGGCucGUGGUacgAGcCGAUCGCGGUc -3'
miRNA:   3'- cGUCGCCGc-CGCCG---UC-GCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 104410 0.68 0.478376
Target:  5'- cGCcGCGGCcuCGGCcuCGGCCGcCGGCc -3'
miRNA:   3'- -CGuCGCCGccGCCGucGCUGGC-GCCG- -5'
10887 3' -64.7 NC_002794.1 + 150297 0.68 0.478376
Target:  5'- cGguGUGGUGGCaGCGGaucacCGGCCGCGu- -3'
miRNA:   3'- -CguCGCCGCCGcCGUC-----GCUGGCGCcg -5'
10887 3' -64.7 NC_002794.1 + 139559 0.68 0.473146
Target:  5'- gGUAGaucCGGCGGCugcuguuuuguuuccGGCGGUGGaugaCGCGGUa -3'
miRNA:   3'- -CGUC---GCCGCCG---------------CCGUCGCUg---GCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 53620 0.68 0.469675
Target:  5'- cGCAGCGuCGGaCGGacgaGGuCGGCCGagcCGGCg -3'
miRNA:   3'- -CGUCGCcGCC-GCCg---UC-GCUGGC---GCCG- -5'
10887 3' -64.7 NC_002794.1 + 18244 0.68 0.469675
Target:  5'- -aAGC-GCGcGCGGCcgaccGGCGACCGCGagauGCg -3'
miRNA:   3'- cgUCGcCGC-CGCCG-----UCGCUGGCGC----CG- -5'
10887 3' -64.7 NC_002794.1 + 2712 0.68 0.469675
Target:  5'- aGgGGCGGUcuggGGCGGUcuuuGGCGACCGagacCGGg -3'
miRNA:   3'- -CgUCGCCG----CCGCCG----UCGCUGGC----GCCg -5'
10887 3' -64.7 NC_002794.1 + 103389 0.68 0.469675
Target:  5'- gGCGGgGGUagaugaggGGCaccacgucgGGCAGCG-CCGCGuGCa -3'
miRNA:   3'- -CGUCgCCG--------CCG---------CCGUCGCuGGCGC-CG- -5'
10887 3' -64.7 NC_002794.1 + 145247 0.68 0.469675
Target:  5'- cGCuGCGGaaGCGGaucgcgaAGCGguuauuGCCGUGGCa -3'
miRNA:   3'- -CGuCGCCgcCGCCg------UCGC------UGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 190988 0.68 0.469675
Target:  5'- gGCAgcGCGGCGaCGGCGucGCGAUCGgccguucgauCGGCa -3'
miRNA:   3'- -CGU--CGCCGCcGCCGU--CGCUGGC----------GCCG- -5'
10887 3' -64.7 NC_002794.1 + 17627 0.68 0.469675
Target:  5'- cGCcGCGGCGaGCGaucCcGCcGCCGCGGCc -3'
miRNA:   3'- -CGuCGCCGC-CGCc--GuCGcUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 54927 0.68 0.469675
Target:  5'- cGCAGCGuCcGCaGC-GCGACCGUGGUc -3'
miRNA:   3'- -CGUCGCcGcCGcCGuCGCUGGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 66576 0.68 0.469675
Target:  5'- cCGGCGcCGGCGGCAGCcccgaguGCUGagaaGGCg -3'
miRNA:   3'- cGUCGCcGCCGCCGUCGc------UGGCg---CCG- -5'
10887 3' -64.7 NC_002794.1 + 13265 0.68 0.468809
Target:  5'- -gGGCuGUGGUGG-AGCGGCCGCuguugacGGCg -3'
miRNA:   3'- cgUCGcCGCCGCCgUCGCUGGCG-------CCG- -5'
10887 3' -64.7 NC_002794.1 + 149671 0.68 0.464494
Target:  5'- aGCGGgGGCgcgucgcgcucgacuGGCcGCGGgGGCCGCcuGGCg -3'
miRNA:   3'- -CGUCgCCG---------------CCGcCGUCgCUGGCG--CCG- -5'
10887 3' -64.7 NC_002794.1 + 61821 0.68 0.461056
Target:  5'- cCGGCGGCcgccGGCGGcCGGCGucacuCCGCuccGCg -3'
miRNA:   3'- cGUCGCCG----CCGCC-GUCGCu----GGCGc--CG- -5'
10887 3' -64.7 NC_002794.1 + 71785 0.68 0.461056
Target:  5'- cGC-GCGGCGaGUcGCcccccGGCGGgCGCGGCg -3'
miRNA:   3'- -CGuCGCCGC-CGcCG-----UCGCUgGCGCCG- -5'
10887 3' -64.7 NC_002794.1 + 186344 0.68 0.461056
Target:  5'- aCGGCGGCGGCGacgugcccgacCAGCcGCCGCcGCc -3'
miRNA:   3'- cGUCGCCGCCGCc----------GUCGcUGGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.